Miyakogusa Predicted Gene

Lj3g3v1102860.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1102860.1 tr|G8A154|G8A154_MEDTR White-brown-complex ABC
transporter family OS=Medicago truncatula
GN=MTR_117s,90.32,0,ATP-BINDING CASSETTE TRANSPORTER PLANT,NULL;
ATP-BINDING CASSETTE TRANSPORTER,NULL; seg,NULL; ABC2_m,CUFF.42208.1
         (1494 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS334502 similar to UniRef100_Q9ZUU9 Cluster: White-bro...   115   8e-25
gnl|LJGI|TC67137 similar to UniRef100_A7NX09 Cluster: Chromosome...    54   3e-06

>gnl|LJGI|FS334502 similar to UniRef100_Q9ZUU9 Cluster: White-brown complex homolog
           protein 3; n=1; Arabidopsis thaliana|Rep: White-brown
           complex homolog protein 3 - Arabidopsis thaliana
           (Mouse-ear cress), partial (4%)
          Length = 800

 Score =  115 bits (58), Expect = 8e-25
 Identities = 111/129 (86%), Gaps = 6/129 (4%)
 Strand = Plus / Plus

                                                                       
Query: 446 acaacggggatttttcttctgtaaacatggacactgctgttgctatacgcacactggaag 505
           |||| |||||||||  || ||||||||||||||||  |||||||||||||||||| ||||
Sbjct: 271 acaatggggattttgattatgtaaacatggacactcttgttgctatacgcacactagaag 330

                                                                       
Query: 506 caacttataagtcatctgcagatgca------gctcccgtcgaaacaatgattctgaagc 559
           | ||||||||||||||||||||||||      ||| | || |||||||||||||||||||
Sbjct: 331 cgacttataagtcatctgcagatgcagctgctgcttctgttgaaacaatgattctgaagc 390

                    
Query: 560 tcactgaaa 568
           | |||||||
Sbjct: 391 taactgaaa 399


>gnl|LJGI|TC67137 similar to UniRef100_A7NX09 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=2; core
           eudicotyledons|Rep: Chromosome chr5 scaffold_2, whole
           genome shotgun sequence - Vitis vinifera (Grape),
           partial (9%)
          Length = 813

 Score = 54.0 bits (27), Expect = 3e-06
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 787 tttgtatcattctgctcccttctaagcattgctagggtgccagcccttattaaagaaatc 846
           ||||| ||||||||||||| | |||||||||||| |||| | || | | |||||||||||
Sbjct: 497 tttgtttcattctgctcccctataagcattgctatggtgtctgcacatgttaaagaaatc 556

              
Query: 847 aag 849
           |||
Sbjct: 557 aag 559