Miyakogusa Predicted Gene

Lj3g3v1089440.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1089440.1 Non Chatacterized Hit- tr|Q9M1S2|Q9M1S2_ARATH
Putative uncharacterized protein T5N23_140
OS=Arabidop,81.36,2e-19,ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY
PROTEIN,NULL; CALCIUM-ACTIVATED CHLORIDE CHANNEL
REGULAT,AV407180.path1.1
         (186 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV407180 similar to UniRef100_A7PI33 Cluster: Chromosom...   319   3e-87

>gnl|LJGI|AV407180 similar to UniRef100_A7PI33 Cluster: Chromosome chr13 scaffold_17,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_17, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 365

 Score =  319 bits (161), Expect = 3e-87
 Identities = 179/185 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaggtacaaagattgcattactaaaacgagctatgggatttgtcatacagaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atggcaggtacaaagattgcattactaaaacgagctatgggatttgtcatacagaatcta 237

                                                                       
Query: 61  agttcatcagaccggctttctgttgttgccttttcctccacagcccgccgcatcttccct 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||
Sbjct: 238 agttcatcagaccggctttctgttgttgccttttccaccacagcccgccgcatcagccct 297

                                                                       
Query: 121 ctacggcagatgactgagaccggacggcagcaggccttacaagcagttaattcattggat 180
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| 
Sbjct: 298 ctacggcagatgactgagaccggacggcagcaggccatacaagcagtgaattcattggac 357

                
Query: 181 ccaga 185
           |||||
Sbjct: 358 ccaga 362