Miyakogusa Predicted Gene
- Lj3g3v1074930.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1074930.1 tr|Q8GUQ0|Q8GUQ0_BRAOE DsRNA-binding protein
OS=Brassica oleracea var. acephala GN=lh PE=2
SV=1,39.38,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Double-stranded RNA binding motif,Double-stranded R,CUFF.42131.1
(1431 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67469 similar to UniRef100_A7NZJ7 Cluster: Chromosome... 2771 0.0
gnl|LJGI|TC67545 homologue to UniRef100_A7NZJ7 Cluster: Chromoso... 480 e-134
gnl|LJGI|TC76447 similar to UniRef100_A7NZJ7 Cluster: Chromosome... 72 1e-11
>gnl|LJGI|TC67469 similar to UniRef100_A7NZJ7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (74%)
Length = 1974
Score = 2771 bits (1398), Expect = 0.0
Identities = 1421/1431 (99%)
Strand = Plus / Plus
Query: 1 atgtacaagaaccagcttcaagagctggcgcagcgaagctgcttcaatcttccttcctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atgtacaagaaccagcttcaagagctggcgcagcgaagctgcttcaatcttccttcctac 257
Query: 61 acttgcattcgggaaggtcctgatcacgcgccgaggttcaaggccaccgtcaacttcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acttgcattcgggaaggtcctgatcacgcgccgaggttcaaggccaccgtcaacttcaac 317
Query: 121 ggcgagatcttcgagagtcctcactactgcaatactctccgtcaggcggagcactccgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggcgagatcttcgagagtcctcactactgcaatactctccgtcaggcggagcactccgcc 377
Query: 181 gctgaggtcgttctcagttcgctctcccaccgtggtccgtctcgctccctcgccgctaag 240
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 gctgaggtcgctctcagttcgctctcccaccgtggtccgtctcactccctcgccgctaag 437
Query: 241 atcctcgatgagactggagtctacaagaatctcttacaggaaattgcacagagagtaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcctcgatgagactggagtctacaagaatctcttacaggaaattgcacagagagtaggg 497
Query: 301 gctccattgcctcaatacacaacattcaggtcaggcttagggcatttacctgtttttact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gctccattgcctcaatacacaacattcaggtcaggcttagggcatttacctgtttttact 557
Query: 361 ggaatagtggagttggctggaatcacatttactggtgaacctgccaagaataagaaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggaatagtggagttggctggaatcacatttactggtgaacctgccaagaataagaaacaa 617
Query: 421 gctgnnnnnnnttctgctatggcggcttggtcatctttaaaacaattggccaaagagact 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gctgaaaaaaattctgctatggcggcttggtcatctttaaaacaattggccaaagagact 677
Query: 481 gctagctcttcaagtgaaccagagaacaatgacgaactagaacagatcactattgcacgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctagctcttcaagtgaaccagagaacaatgacgaactagaacagatcactattgcacgg 737
Query: 541 gctttactgaactaccgtctgaaggaaaagatggcaatgtctgatccaaatgctccaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gctttactgaactaccgtctgaaggaaaagatggcaatgtctgatccaaatgctccaatt 797
Query: 601 ccatttcagaagaagtttcagattcaaagtcccaggccaaccagtactcaacctccaccc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ccatttcagaagaagtttcagattcaaagtcccaggccaaccagtactcaacctccaccc 857
Query: 661 cccaaaacatcaaagatccttcctctaatttgccaaaaggcagcacctcgaagcaggcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cccaaaacatcaaagatccttcctctaatttgccaaaaggcagcacctcgaagcaggcct 917
Query: 721 tcattggtaacagcaaatgacagtgttcgaagcaaaccttcttttgcaacagctaatgat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tcattggtaacagcaaatgacagtgttcgaagcaaaccttcttttgcaacagctaatgat 977
Query: 781 aatcctcgaagcaaatatccaccagcagcagcaaccagtgacagatctggggtgccacca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 aatcctcgaagcaaatatccaccagcagcagcaaccagtgacagatctggggtgccacca 1037
Query: 841 cagtcttctgctctggaaagccgggtattccgtcccctgaagttccctgcagcaggagca 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1038 cagtcttctgctctggaaagccgggtattccgtcccctgaagttccctgcggcaggagca 1097
Query: 901 gcaccttatgttcccctacgacaaatgagatcaccttgccatggggttgcacctccagtg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 gcaccttatgttcccctacgacaaatgagatcaccttgccatggggttgcacctccagtg 1157
Query: 961 actgtaaggaacatggtacctgtattctctgcaccaccccttccaccacctcctacagtg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 actgtaaggaacatggtacctgtattctctgcaccaccccttccaccacctcctacagtg 1217
Query: 1021 catcaggtaatacgagctcctcctgtacgagttgctcctccagtcaatattcggcaagct 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 catcaggtaatacgagctcctcctgtacgagttgctcctccagtcaatattcggcaagct 1277
Query: 1081 attcctgtatatgctgctccgccagtgccagcaagaaaagatgaaccttctctcatacaa 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 attcctgtatatgctgctccgccagtgccagcaagaaaagatgaaccttctctcatacaa 1337
Query: 1141 aaagatctgtctactattagtatcccttgccagcaagatatactgccacataaaattcaa 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 aaagatctgtctactattagtatcccttgccagcaagatatactgccacataaaattcaa 1397
Query: 1201 gagacgggcaaggctgagaacagcctaccagtcaattttcagcaagctattcctgtatat 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 gagacgggcaaggctgagaacagcctaccagtcaattttcagcaagctattcctgtatat 1457
Query: 1261 gctgcaccaccaacaagaatagatgaaccttctcttatacaaaaagaagagctacctact 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 gctgcaccaccaacaagaatagatgaaccttctcttatacaaaaagaagagctacctact 1517
Query: 1321 attagtacccctggtcagcaagataaactgccacctagagttcaagagacggagaacagc 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 attagtacccctggtcagcaagataaactgccacctagagttcaagagacggagaacagc 1577
Query: 1381 ccatcagaatcagagaccgtgcgtaacttggagaagctgaaaatttgaaat 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 ccatcagaatcagagaccgtgcgtaacttggagaagctgaaaatttgaaat 1628
>gnl|LJGI|TC67545 homologue to UniRef100_A7NZJ7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (48%)
Length = 790
Score = 480 bits (242), Expect = e-134
Identities = 478/559 (85%)
Strand = Plus / Plus
Query: 1 atgtacaagaaccagcttcaagagctggcgcagcgaagctgcttcaatcttccttcctac 60
|||||||||||||||||||| ||||||||||| || ||||||||||| || |||||||||
Sbjct: 232 atgtacaagaaccagcttcaggagctggcgcaacggagctgcttcaacctcccttcctac 291
Query: 61 acttgcattcgggaaggtcctgatcacgcgccgaggttcaaggccaccgtcaacttcaac 120
|| ||| | ||||||||||| |||||||||||| | |||||||||||||| |||||||||
Sbjct: 292 acgtgcctccgggaaggtcccgatcacgcgccgcgcttcaaggccaccgttaacttcaac 351
Query: 121 ggcgagatcttcgagagtcctcactactgcaatactctccgtcaggcggagcactccgcc 180
||||||| |||||||| |||||||||||| || || || ||||||||||||||||||
Sbjct: 352 ggcgagaccttcgagacccctcactactgctccacgcttcgccaggcggagcactccgcc 411
Query: 181 gctgaggtcgttctcagttcgctctcccaccgtggtccgtctcgctccctcgccgctaag 240
|||||||| | ||||| ||| |||||||||||||| || |||| |||||||||||| |||
Sbjct: 412 gctgaggtggctctcaattcactctcccaccgtggcccctctcactccctcgccgccaag 471
Query: 241 atcctcgatgagactggagtctacaagaatctcttacaggaaattgcacagagagtaggg 300
|||||||||||||| || ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 472 atcctcgatgagacgggggtctacaagaacctcttacaggaaattgcgcaaagggtaggg 531
Query: 301 gctccattgcctcaatacacaacattcaggtcaggcttagggcatttacctgtttttact 360
||||||||||| |||||||||||||||||||||||| |||| || |||||||||| |||
Sbjct: 532 gctccattgccacaatacacaacattcaggtcaggcctaggacacctacctgttttcact 591
Query: 361 ggaatagtggagttggctggaatcacatttactggtgaacctgccaagaataagaaacaa 420
|| | || || || ||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 592 gggactgtagaattagctggcattacatttactggtgaacctgccaagagtaagaaacaa 651
Query: 421 gctgnnnnnnnttctgctatggcggcttggtcatctttaaaacaattggccaaagagact 480
|| | | | |||||||| || ||||| || | || || ||||| ||||| |||
Sbjct: 652 gcagagaaaaatgcagctatggcagcatggtcgactcttaagcagttggcaaaagaaact 711
Query: 481 gctagctcttcaagtgaaccagagaacaatgacgaactagaacagatcactattgcacgg 540
| |||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||||
Sbjct: 712 tcaagctcttcaactgaaccagagaacaatgatgaattagaacagatcaccatagcacgg 771
Query: 541 gctttactgaactaccgtc 559
|| || |||||| |||||
Sbjct: 772 gccttgttgaacttccgtc 790
>gnl|LJGI|TC76447 similar to UniRef100_A7NZJ7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (12%)
Length = 573
Score = 71.9 bits (36), Expect = 1e-11
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1046 tacgagttgctcctccagtcaatattcggcaagctattcctgtatatgctgctccgccag 1105
|||||||||||||||| ||||||||||||||||| |||| ||||| |||||||| ||||
Sbjct: 92 tacgagttgctcctccggtcaatattcggcaagcagttccagtatacgctgctcccccag 151