Miyakogusa Predicted Gene
- Lj3g3v1059090.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1059090.1 tr|D3GBU8|D3GBU8_LOTJA Auxin response factor 4
OS=Lotus japonicus GN=ARF4 PE=2 SV=1,93.68,0,DNA-binding pseudobarrel
domain,DNA-binding pseudobarrel domain; CAD & PB1 domains,NULL; B3,B3
DNA b,CUFF.42086.1
(2385 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS350751 similar to UniRef100_Q2HSV9 Cluster: Transcrip... 458 e-128
gnl|LJGI|BP084260 similar to UniRef100_A7NZG6 Cluster: Chromosom... 365 e-100
gnl|LJGI|BP049491 similar to UniRef100_A7NZG6 Cluster: Chromosom... 323 3e-87
gnl|LJGI|BP062963 similar to UniRef100_A7NZG6 Cluster: Chromosom... 238 1e-61
gnl|LJGI|FS324324 similar to UniRef100_A7NZG6 Cluster: Chromosom... 161 2e-38
gnl|LJGI|BP042389 113 5e-24
gnl|LJGI|FS329766 similar to UniRef100_A7NZG6 Cluster: Chromosom... 103 5e-21
gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcript... 64 4e-09
gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromos... 58 3e-07
gnl|LJGI|TC60440 similar to UniRef100_A2Q532 Cluster: Transcript... 56 1e-06
>gnl|LJGI|FS350751 similar to UniRef100_Q2HSV9 Cluster: Transcriptional factor B3; Auxin
response factor; Aux/IAA_ARF_dimerisation; n=1; Medicago
truncatula|Rep: Transcriptional factor B3; Auxin response
factor; Aux/IAA_ARF_dimerisation - Medicago truncatula
(Barrel medic), partial (17%)
Length = 678
Score = 458 bits (231), Expect = e-128
Identities = 399/455 (87%)
Strand = Plus / Minus
Query: 1930 tgtaaactattcggatttcccttgtctggggaaagtacctcccaaaatttacagaacact 1989
|||||||||||||| ||||| ||||||||||||| || ||||||||||||||||| ||
Sbjct: 670 tgtaaactattcgggtttcctttgtctggggaaactagtccccaaaatttacagaaccct 611
Query: 1990 gctaaaagaagttgcaccaaggttcacaagcaaggtagcttagttggaagagccattgat 2049
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 610 gctaaaaggagttgcacaaaggttcacaagcaaggaagcttagttggaagagccattgat 551
Query: 2050 ctctcaagattgagcagctacaatgacctgctgagtgaactagagaggctatttagcatg 2109
|| ||||||||||| ||||||||||| || |||| ||||||||||| |||||| |||||
Sbjct: 550 ctatcaagattgagtagctacaatgatctactgaatgaactagagaaactatttggcatg 491
Query: 2110 gaaggccttctaagagaacctgataagggatggagagtcctctacactgaccgtgaaaat 2169
||||||||||||| ||| ||||||||||||||||| |||| ||||||||| |||| |||
Sbjct: 490 gaaggccttctaaaagatcctgataagggatggaggatcctgtacactgacagtgagaat 431
Query: 2170 gacatcatggttgtgggagatgatccatggcatgaattctgcaatgtggtatccaagatt 2229
|||||||||||||| || ||||| || |||||||| || || ||||||| ||||||||
Sbjct: 430 gacatcatggttgtaggggatgacccttggcatgagttttgtgatgtggtgtccaagatc 371
Query: 2230 catatatatacacaagaagaagtggagaagatgacaatcggtatgatgagtgacgatact 2289
||||||||||| |||||||||||||||||||||||||| || |||| ||||| ||||||
Sbjct: 370 catatatatacccaagaagaagtggagaagatgacaattgggatgactagtgatgatact 311
Query: 2290 cagagcagtttggaacaggcaccactgattatggagacttctaagtcctcctcagtttgt 2349
|| ||| ||||||| ||||||||| || |||||||| |||| ||||| |||||||| |
Sbjct: 310 catagctgtttggagcaggcaccagtggttatggaggcttcaaagtcttcctcagtggga 251
Query: 2350 cagccagattcttctccgacggtagttagaatcta 2384
|||||||||| |||||| || ||||||||| ||||
Sbjct: 250 cagccagattattctccaactgtagttagagtcta 216
>gnl|LJGI|BP084260 similar to UniRef100_A7NZG6 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (8%)
Length = 333
Score = 365 bits (184), Expect = e-100
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 2202 tgaattctgcaatgtggtatccaagattcatatatatacacaagaagaagtggagaagat 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgaattctgcaatgtggtatccaagattcatatatatacacaagaagaagtggagaagat 181
Query: 2262 gacaatcggtatgatgagtgacgatactcagagcagtttggaacaggcaccactgattat 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gacaatcggtatgatgagtgacgatactcagagcagtttggaacaggcaccactgattat 121
Query: 2322 ggagacttctaagtcctcctcagtttgtcagccagattcttctccgacggtagttagaat 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggagacttctaagtcctcctcagtttgtcagccagattcttctccgacggtagttagaat 61
Query: 2382 ctag 2385
||||
Sbjct: 60 ctag 57
>gnl|LJGI|BP049491 similar to UniRef100_A7NZG6 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 516
Score = 323 bits (163), Expect = 3e-87
Identities = 329/383 (85%), Gaps = 11/383 (2%)
Strand = Plus / Minus
Query: 515 ctgttcctcgtagagctgctgaagactgtttccctcctttg---------cagcaaagac 565
|||||||||||||||||||||| |||||| | ||||||||| ||||| ||||
Sbjct: 516 ctgttcctcgtagagctgctgaggactgtcttcctcctttggattataagcagcagagac 457
Query: 566 cctctcaagagcttgttgcaaaagacctgcatggtgttgagtggaaatttcgccatattt 625
||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||
Sbjct: 456 cctctcaagagcttgttgcgaaagacctgcatggtgtggagtggaaattttgtcatattt 397
Query: 626 atagaggtcagccgaggcggcatctgctcactactggctggagtatttttgttagccaaa 685
|||||||| | || ||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 396 atagaggttaaccaaggtggcatctactcactactggctggagtatttttgtaagccaaa 337
Query: 686 agaagcttgtttctggcgatgcagt-tctctttctaagaggtgaaaatggagaattgaga 744
| || ||||||||||| |||||||| ||| |||||||| || |||||||||||| | |||
Sbjct: 336 ataatcttgtttctggtgatgcagtgtct-tttctaaggggcgaaaatggagaactaaga 278
Query: 745 ttgggaatcagaagagctgctcgaccgagaaatggtcttcctgaatcaattgttggtaac 804
||||||||||||||| ||| | | || |||||||||||||||||||||| |||||||||
Sbjct: 277 ttgggaatcagaagatctgttgggcctagaaatggtcttcctgaatcaactgttggtaat 218
Query: 805 cagagctgttatccaaatttcctttcttccgtggctaatgccatatccgcgagaagcatg 864
|||| | ||||||| || |||| ||| ||||| ||||| |||||| | |||||||||
Sbjct: 217 cagaacagttatccccatatcctatctgttgtggcaaatgctatatccaccagaagcatg 158
Query: 865 tttcatgttttctacagtccaag 887
|| |||||||||||||||||||
Sbjct: 157 ttctatgttttctacagtccaag 135
>gnl|LJGI|BP062963 similar to UniRef100_A7NZG6 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (4%)
Length = 422
Score = 238 bits (120), Expect = 1e-61
Identities = 175/188 (93%), Gaps = 4/188 (2%)
Strand = Plus / Minus
Query: 2202 tgaattctgcaatgtggtatccaagattcatatatatacacaagaagaagtggagaagat 2261
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 319 tgaattctgccatgtggtatcccagattcatatatatacaccagaagaagtggagaagat 260
Query: 2262 g-acaatcggtatgatgagtgacgatactcagagcagtttggaacaggcaccactgatta 2320
| || |||||||||||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct: 259 gcaccatcggtatgatgagtgacgatactcagaccagtttgggaccggcacccctgatta 200
Query: 2321 tggagacttctaagtcctcctcagtttgt-cag-ccagattcttctccga-cggtagtta 2377
|||||||||||||||||||||| |||||| ||| |||||||||||||||| |||||||||
Sbjct: 199 tggagacttctaagtcctcctccgtttgtccagcccagattcttctccgaccggtagtta 140
Query: 2378 gaatctag 2385
||||||||
Sbjct: 139 gaatctag 132
>gnl|LJGI|FS324324 similar to UniRef100_A7NZG6 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 653
Score = 161 bits (81), Expect = 2e-38
Identities = 141/161 (87%)
Strand = Plus / Plus
Query: 111 tgtgtcttcttcttatcttgagctatggcatgcttgtgctggcccccttacttccctacc 170
|||||||||||||||||||||||| |||||||||||||||||||| ||||| || || ||
Sbjct: 493 tgtgtcttcttcttatcttgagctttggcatgcttgtgctggccctcttacctcacttcc 552
Query: 171 aaagaaagggaatgtggtagtctatttcccacaaggccacttagaacaagctgcatcttt 230
|||||||| |||||||| || ||||| |||||||| ||||||||||||| || |||||
Sbjct: 553 taagaaaggaaatgtggtggtgtattttccacaaggtcacttagaacaagtagcttcttt 612
Query: 231 ctctcccttttctccattggatgttcccacctatgatcttc 271
|||||| ||| | |||||||| | ||||||||||||||||
Sbjct: 613 ctctccttttgccccattggagatgcccacctatgatcttc 653
>gnl|LJGI|BP042389
Length = 423
Score = 113 bits (57), Expect = 5e-24
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 2329 tctaagtcctcctcagtttgtcagccagattcttctccgacggtagttagaatctag 2385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctaagtcctcctcagtttgtcagccagattcttctccgacggtagttagaatctag 367
>gnl|LJGI|FS329766 similar to UniRef100_A7NZG6 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 771
Score = 103 bits (52), Expect = 5e-21
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 630 aggtcagccgaggcggcatctgctcactactggctggagtatttttgttagccaaaagaa 689
||||||||| ||||| ||| ||||||||||||||||||||||| |||| |||||||| ||
Sbjct: 608 aggtcagccaaggcgacatttgctcactactggctggagtattattgtaagccaaaacaa 667
Query: 690 gcttgtttctggcgatgcagttctcttt 717
|||||||||||| ||||| ||||||||
Sbjct: 668 tcttgtttctggcaatgcaattctcttt 695
>gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin
response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (37%)
Length = 1325
Score = 63.9 bits (32), Expect = 4e-09
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 452 caacccctcatatgttctgcaaaacacttactgcctctgataccagcactcatgggggct 511
|||| ||||| ||||||||||| || || || || || || || ||||||||||| || |
Sbjct: 1003 caacacctcacatgttctgcaagactctgacagcttcagacactagcactcatggtggat 1062
Query: 512 tctctgttcctcgtagagctgctgaaga 539
||||||| |||||| |||||||||||||
Sbjct: 1063 tctctgtgcctcgtcgagctgctgaaga 1090
>gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 545
Score = 58.0 bits (29), Expect = 3e-07
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 489 tgataccagcactcatgggggcttctctgttcctcgtagagctgctgaa 537
|||||||||||||||||| || || ||||||||||| ||||| ||||||
Sbjct: 88 tgataccagcactcatggaggattttctgttcctcgaagagcagctgaa 136
>gnl|LJGI|TC60440 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3;
Auxin response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (21%)
Length = 766
Score = 56.0 bits (28), Expect = 1e-06
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 450 atcaacccctcatatgttctgcaaaacacttactgcctctgataccagcactcatggggg 509
|||||| || || ||||||||||| || || ||||| |||||||| || |||||||| ||
Sbjct: 689 atcaacaccccacatgttctgcaagactctcactgcatctgatactagtactcatggtgg 748
Query: 510 cttctctgttcctcgt 525
|||||||| ||||||
Sbjct: 749 attctctgtgcctcgt 764