Miyakogusa Predicted Gene
- Lj3g3v1048870.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1048870.1 Non Chatacterized Hit- tr|I1MJ28|I1MJ28_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,89.98,0,seg,NULL;
CHAPERONINS_CPN60,Chaperonin Cpn60, conserved site; coiled-coil,NULL;
GroEL apical domain-,CUFF.42087.1
(1791 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64354 homologue to UniRef100_P08927 Cluster: RuBisCO ... 1608 0.0
gnl|LJGI|TC76045 homologue to UniRef100_P08927 Cluster: RuBisCO ... 1394 0.0
gnl|LJGI|TC80658 homologue to UniRef100_P08927 Cluster: RuBisCO ... 1104 0.0
gnl|LJGI|TC68111 homologue to UniRef100_P21240 Cluster: RuBisCO ... 989 0.0
gnl|LJGI|AV779746 similar to UniRef100_Q56ZP2 Cluster: RuBisCO s... 240 3e-62
gnl|LJGI|TC82443 66 8e-10
gnl|LJGI|AV774755 60 5e-08
>gnl|LJGI|TC64354 homologue to UniRef100_P08927 Cluster: RuBisCO large
subunit-binding protein subunit beta, chloroplast
precursor; n=1; Pisum sativum|Rep: RuBisCO large
subunit-binding protein subunit beta, chloroplast
precursor - Pisum sativum (Garden pea), partial (53%)
Length = 1094
Score = 1608 bits (811), Expect = 0.0
Identities = 852/872 (97%)
Strand = Plus / Plus
Query: 1 atggcgtcaaccgctgccggctcctgcaacctctcctcctccgcctccatctccgccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggcgtcaaccgctgccggctcctgcaacctctcctcctccgcctccatctccgccttc 157
Query: 61 cccttcgccggcggcgcgagacggnnnnnnnnnnnnnnnnnnnacagcgttgttttatcc 120
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 158 cccttcgccggcggcgcgagacggagcagcagcagcagcagcaacagcgttgttttatcc 217
Query: 121 aggaagacccgcaacctcaaggtctccgccatggctaaggagttgcatttcaacaaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aggaagacccgcaacctcaaggtctccgccatggctaaggagttgcatttcaacaaggat 277
Query: 181 ggttccgctatcaagaggcttcaggctggcgtgaacaagcttgcggatctggttggtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggttccgctatcaagaggcttcaggctggcgtgaacaagcttgcggatctggttggtgtt 337
Query: 241 actcttggtcctaaagggaggaatgttgttcttgagagcaagtatggttcacctaaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actcttggtcctaaagggaggaatgttgttcttgagagcaagtatggttcacctaaaatt 397
Query: 301 gtcaatgatggtgttactgttgctaaagaggttgagttggaggatcctgttgagaatatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtcaatgatggtgttactgttgctaaagaggttgagttggaggatcctgttgagaatatc 457
Query: 361 ggtgccaagttggtgagacaggcagctgccaagactaacgatttggctggtgatggaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggtgccaagttggtgagacaggcagctgccaagactaacgatttggctggtgatggaacc 517
Query: 421 acaacctcggttgtcctagctcagggtcttattgcggaaggtgtcaaggttgttgcagcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acaacctcggttgtcctagctcagggtcttattgcggaaggtgtcaaggttgttgcagcg 577
Query: 481 ggtgccaaccctgttcttattacccgtggcattgagaagacaacgaaagctctagtagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggtgccaaccctgttcttattacccgtggcattgagaagacaacgaaagctctagtagct 637
Query: 541 gagcttaaaaagatgtcgaaagaggttgaagatagtgagttggcggatgtggcagcagtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gagcttaaaaagatgtcgaaagaggttgaagatagtgagttggcggatgtggcagcagtc 697
Query: 601 agtgctgggaacaatattgaagtaggaagtatgatagcagaagctttgagcaaggttggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agtgctgggaacaatattgaagtaggaagtatgatagcagaagctttgagcaaggttggt 757
Query: 661 agaaagggtgttgtgacacttgaggagggaaagagtgctgaaaatgctctatatgttgtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agaaagggtgttgtgacacttgaggagggaaagagtgctgaaaatgctctatatgttgtt 817
Query: 721 gaggggatgcaatttgaccgtggttatatttcaccatactttgttactgacagtgagaaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaggggatgcaatttgaccgtggttatatttcaccatactttgttactgacagtgagaaa 877
Query: 781 atgtcagttgagtttgagaactgtaagttgcttttagttgataaaaagataaccaacgca 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 atgtcagttgggtttgagaactgtaagttgcttttagttgataaaaagataaccaacgca 937
Query: 841 agggatcttattaacatacttgaggatgcaat 872
||||||||||||||||||||||||||||||||
Sbjct: 938 agggatcttattaacatacttgaggatgcaat 969
Score = 240 bits (121), Expect = 3e-62
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1610 aatatgaagatttaatggctgctggtatcattgatccaacaaaggtggttagatgttgtc 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 aatatgaagatttaatggctgctggtatcattgatccaacaaaggtggttagatgttgtc 1026
Query: 1670 tggaacatgcatcctctgtggccaaaaccttcttaatgtcagattgtgtagttgttgaga 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 tggaacatgcatcctctgtggccaaaaccttcttaatgtcagattgtgtagttgttgaga 1086
Query: 1730 t 1730
|
Sbjct: 1087 t 1087
>gnl|LJGI|TC76045 homologue to UniRef100_P08927 Cluster: RuBisCO large subunit-binding
protein subunit beta, chloroplast precursor; n=1; Pisum
sativum|Rep: RuBisCO large subunit-binding protein
subunit beta, chloroplast precursor - Pisum sativum
(Garden pea), partial (41%)
Length = 743
Score = 1394 bits (703), Expect = 0.0
Identities = 732/742 (98%), Gaps = 1/742 (0%)
Strand = Plus / Plus
Query: 746 atatttcaccatactttgttactgacagtgagaaaatgtcagttgagtttgagaactgta 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atatttcaccatactttgttactgacagtgagaaaatgtcagttgagtttgagaactgta 61
Query: 806 agttgcttttagttgataaaaagataaccaacgcaagggatcttattaacatacttgagg 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agttgcttttagttgataaaaagataaccaacgcaagggatcttattaacatacttgagg 121
Query: 866 atgcaattagaaatggtttccctattttgatcattgcggaggatattgaacaagaagctt 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atgcaattagaaatggtttccctattttgatcattgcggaggatattgaacaagaagctt 181
Query: 926 tagcgaccctggtggtgaacaaacttagaggatcactaaagattgcagcacttaaggccc 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tagcgaccctggtggtgaacaaacttagaggatcactaaagattgcagcacttaaggccc 241
Query: 986 ctgggtttggagaacgcaagagccagtaccttgatgatattgccattttgacaggaggta 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctgggtttggagaacgcaagagccagtaccttgatgatattgccattttgacaggaggta 301
Query: 1046 ctgtgatcagagaagaggttggtcttactttagacaaagctgggaaagaggttctgggtg 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgtgatcagagaagaggttggtcttactttagacaaagctgggaaagaggttctgggtg 361
Query: 1106 aggcctccaaggtggtgcttaccaaggattcaaccacaattgttggtgatggaagtaccc 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggcctccaaggtggtgcttaccaaggattcaaccacaattgttggtgatggaagtaccc 421
Query: 1166 aagaagctgtgaacaaaagagttgcacaaatcaagaaccagattgaggctgcagaacaag 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aagaagctgtgaacaaaagagttgcacaaatcaagaaccagattgaggctgcagaacaag 481
Query: 1226 actatgaaaaggaaaagctcagtgaaagaattgcaaaactgtctggtggtgtcgccgtga 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actatgaaaaggaaaagctcagtgaaagaattgcaaaactgtctggtggtgtcgccgtga 541
Query: 1286 tacaggttggagcacaaactgag-acagaactcaaagaaaagaaattgagagttgaagat 1344
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacaggttggagcacaaactgagaacagaactcaaagaaaagaaattgagagttgaagat 601
Query: 1345 gctcttaacgccacaaaggcagctgttgaggaaggtattgtagtaggtggtgggtgtact 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gctcttaacgccacaaaggcagctgttgaggaaggtattgtagtaggtggtgggtgtact 661
Query: 1405 ctgctgagacttgcgtcaaaggtggatgcaatcaaggctaccctagataacgatgaagag 1464
||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| |
Sbjct: 662 ctgctaagacttgcgtcnaaggtggatgcaatcaacgctaccctatatancgatgaanan 721
Query: 1465 aaagttggagcagatattgtta 1486
||| |||||||| |||||||||
Sbjct: 722 aaanttggagcacatattgtta 743
>gnl|LJGI|TC80658 homologue to UniRef100_P08927 Cluster: RuBisCO large subunit-binding
protein subunit beta, chloroplast precursor; n=1; Pisum
sativum|Rep: RuBisCO large subunit-binding protein
subunit beta, chloroplast precursor - Pisum sativum
(Garden pea), partial (31%)
Length = 629
Score = 1104 bits (557), Expect = 0.0
Identities = 560/561 (99%)
Strand = Plus / Plus
Query: 540 tgagcttaaaaagatgtcgaaagaggttgaagatagtgagttggcggatgtggcagcagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagcttaaaaagatgtcgaaagaggttgaagatagtgagttggcggatgtggcagcagt 60
Query: 600 cagtgctgggaacaatattgaagtaggaagtatgatagcagaagctttgagcaaggttgg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagtgctgggaacaatattgaagtaggaagtatgatagcagaagctttgagcaaggttgg 120
Query: 660 tagaaagggtgttgtgacacttgaggagggaaagagtgctgaaaatgctctatatgttgt 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacaaagggtgttgtgacacttgaggagggaaagagtgctgaaaatgctctatatgttgt 180
Query: 720 tgaggggatgcaatttgaccgtggttatatttcaccatactttgttactgacagtgagaa 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaggggatgcaatttgaccgtggttatatttcaccatactttgttactgacagtgagaa 240
Query: 780 aatgtcagttgagtttgagaactgtaagttgcttttagttgataaaaagataaccaacgc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatgtcagttgagtttgagaactgtaagttgcttttagttgataaaaagataaccaacgc 300
Query: 840 aagggatcttattaacatacttgaggatgcaattagaaatggtttccctattttgatcat 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagggatcttattaacatacttgaggatgcaattagaaatggtttccctattttgatcat 360
Query: 900 tgcggaggatattgaacaagaagctttagcgaccctggtggtgaacaaacttagaggatc 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcggaggatattgaacaagaagctttagcgaccctggtggtgaacaaacttagaggatc 420
Query: 960 actaaagattgcagcacttaaggcccctgggtttggagaacgcaagagccagtaccttga 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actaaagattgcagcacttaaggcccctgggtttggagaacgcaagagccagtaccttga 480
Query: 1020 tgatattgccattttgacaggaggtactgtgatcagagaagaggttggtcttactttaga 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgatattgccattttgacaggaggtactgtgatcagagaagaggttggtcttactttaga 540
Query: 1080 caaagctgggaaagaggttct 1100
|||||||||||||||||||||
Sbjct: 541 caaagctgggaaagaggttct 561
Score = 129 bits (65), Expect = 7e-29
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1140 cacaattgttggtgatggaagtacccaagaagctgtgaacaaaagagttgcacaaatcaa 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacaattgttggtgatggaagtacccaagaagctgtgaacaaaagagttgcacaaatcaa 561
Query: 1200 gaacc 1204
|||||
Sbjct: 560 gaacc 556
>gnl|LJGI|TC68111 homologue to UniRef100_P21240 Cluster: RuBisCO large subunit-binding
protein subunit beta, chloroplast precursor; n=1;
Arabidopsis thaliana|Rep: RuBisCO large subunit-binding
protein subunit beta, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress), partial (29%)
Length = 951
Score = 989 bits (499), Expect = 0.0
Identities = 502/503 (99%)
Strand = Plus / Plus
Query: 1289 aggttggagcacaaactgagacagaactcaaagaaaagaaattgagagttgaagatgctc 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aggttggagcacaaactgagacagaactcaaagaaaagaaattgagagttgaagatgctc 187
Query: 1349 ttaacgccacaaaggcagctgttgaggaaggtattgtagtaggtggtgggtgtactctgc 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttaacgccacaaaggcagctgttgaggaaggtattgtagtaggtggtgggtgtactctgc 247
Query: 1409 tgagacttgcgtcaaaggtggatgcaatcaaggctaccctagataacgatgaagagaaag 1468
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taagacttgcgtcaaaggtggatgcaatcaaggctaccctagataacgatgaagagaaag 307
Query: 1469 ttggagcagatattgttaaaagagctcttagttaccctctaaaattaattgctaagaatg 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttggagcagatattgttaaaagagctcttagttaccctctaaaattaattgctaagaatg 367
Query: 1529 ctggtgtaaatggcagtgttgtgagtgagaaggttctttctagtgacaattttagatatg 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctggtgtaaatggcagtgttgtgagtgagaaggttctttctagtgacaattttagatatg 427
Query: 1589 gatataatgctgccactggtaaatatgaagatttaatggctgctggtatcattgatccaa 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gatataatgctgccactggtaaatatgaagatttaatggctgctggtatcattgatccaa 487
Query: 1649 caaaggtggttagatgttgtctggaacatgcatcctctgtggccaaaaccttcttaatgt 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 caaaggtggttagatgttgtctggaacatgcatcctctgtggccaaaaccttcttaatgt 547
Query: 1709 cagattgtgtagttgttgagattaaggaaccagagcctgtagttgctggcaaccctatgg 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cagattgtgtagttgttgagattaaggaaccagagcctgtagttgctggcaaccctatgg 607
Query: 1769 acaactcaggatatgggatttaa 1791
|||||||||||||||||||||||
Sbjct: 608 acaactcaggatatgggatttaa 630
Score = 73.8 bits (37), Expect = 3e-12
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1256 ttgcaaaactgtctggtggtgtcgccgtgatacaggt 1292
|||||||||||||||||||||||||||||||||||||
Sbjct: 4 ttgcaaaactgtctggtggtgtcgccgtgatacaggt 40
>gnl|LJGI|AV779746 similar to UniRef100_Q56ZP2 Cluster: RuBisCO subunit binding-protein
beta subunit; n=2; Arabidopsis thaliana|Rep: RuBisCO
subunit binding-protein beta subunit - Arabidopsis
thaliana (Mouse-ear cress), partial (44%)
Length = 517
Score = 240 bits (121), Expect = 3e-62
Identities = 203/228 (89%), Gaps = 3/228 (1%)
Strand = Plus / Minus
Query: 1552 agtgagaaggttctttctagtgacaattttagatatggatataatgctgccactggtaaa 1611
|||||||||||||||||||||||| || | |||||||||||| | |||||| |||| |||
Sbjct: 517 agtgagaaggttctttctagtgaccatctcagatatggatatgaagctgcccctggcaaa 458
Query: 1612 tatgaagatttaatggctgctggtatcattgatccaacaaaggtggttagatgttgtctg 1671
||||||||||||||||||||||||||||||||||| || |||| || |||||||||||||
Sbjct: 457 tatgaagatttaatggctgctggtatcattgatcccaccaaggcggatagatgttgtctg 398
Query: 1672 gaacatgcatcctctgtggccaaaaccttcttaatgtcagattgtgtagttgttgagatt 1731
| ||| ||||||||||||||| | ||| |||| ||||||||||| |||||||||||||||
Sbjct: 397 ggacaggcatcctctgtggcccagaccctcttcatgtcagattgcgtagttgttgagatt 338
Query: 1732 aaggaaccagagcc--tgta-gttgctggcaaccctatggacaactca 1776
|||||| | ||||| ||| |||||||||||||||||||||| ||||
Sbjct: 337 aaggaatccgagccctcgtacgttgctggcaaccctatggacagctca 290
>gnl|LJGI|TC82443
Length = 689
Score = 65.9 bits (33), Expect = 8e-10
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1685 ctgtggccaaaaccttcttaatgtcagattgtgtagttgttgagattaaggaaccagagc 1744
|||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||
Sbjct: 326 ctgtggccaaaaccttct-aatgtcagattgcttagttgttgagacaaaggaatcagagt 384
Query: 1745 ctgta 1749
|||||
Sbjct: 385 ctgta 389
>gnl|LJGI|AV774755
Length = 261
Score = 60.0 bits (30), Expect = 5e-08
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 1747 gtagttgctggca-accctatggacaactcaggatatgggatttaa 1791
||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct: 250 gtagttgctggcacaccctatggactactccggatatgggatttaa 205