Miyakogusa Predicted Gene

Lj3g3v0966470.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0966470.1 tr|C0Z2Y2|C0Z2Y2_ARATH AT1G79040 protein
OS=Arabidopsis thaliana GN=AT1G79040 PE=4 SV=1,67.61,5e-19,seg,NULL;
PsbR,Photosystem II PsbR,CUFF.42327.1
         (420 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63758 similar to UniRef100_Q6V7X5 Cluster: 10 kDa pho...   833   0.0  
gnl|LJGI|DC596230 similar to UniRef100_A8VIE2 Cluster: Chloropla...   430   e-120
gnl|LJGI|AV414034 homologue to UniRef100_Q2PXN6 Cluster: Chlorop...   190   5e-48

>gnl|LJGI|TC63758 similar to UniRef100_Q6V7X5 Cluster: 10 kDa photosystem II
           polypeptide; n=1; Trifolium pratense|Rep: 10 kDa
           photosystem II polypeptide - Trifolium pratense (Red
           clover), complete
          Length = 731

 Score =  833 bits (420), Expect = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtcttcagtgatggcatctgtgagtctcaaaccagctggtttcagtcttgagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  atggcgtcttcagtgatggcatctgtgagtctcaaaccagctggtttcagtcttgagaaa 95

                                                                       
Query: 61  tcctcagtgagaggacttccttccctttcaaggtcttctgcctccttcagagttgttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tcctcagtgagaggacttccttccctttcaaggtcttctgcctccttcagagttgttgca 155

                                                                       
Query: 121 tctggtggcaagaagattaaaactgacactccttatggaactggtggtggcatgaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tctggtggcaagaagattaaaactgacactccttatggaactggtggtggcatgaacttg 215

                                                                       
Query: 181 aggaatggagttgatgcatctggcaggaagccaaggggaaagggtgtttaccagtatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aggaatggagttgatgcatctggcaggaagccaaggggaaagggtgtttaccagtatgtg 275

                                                                       
Query: 241 gacaagtacggtgctaatgttgatggatacagtcctatctacgataccaaggactggtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gacaagtacggtgctaatgttgatggatacagtcctatctacgataccaaggactggtct 335

                                                                       
Query: 301 ccaaccggtgatgtctacgctggaggtacgactggcttggctatctgggctgtaactcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccaaccggtgatgtctacgctggaggtacgactggcttggctatctgggctgtaactcta 395

                                                                       
Query: 361 cttggtcttctggctgggggagctcttcttgtctacaacacaagtgctttgtcacaatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttggtcttctggctgggggagctcttcttgtctacaacacaagtgctttgtcacaatag 455


>gnl|LJGI|DC596230 similar to UniRef100_A8VIE2 Cluster: Chloroplast photosystem II
           PsbR; n=1; Prosopis juliflora|Rep: Chloroplast
           photosystem II PsbR - Prosopsis juliflora (Mesquite)
           (Algorrobo), partial (50%)
          Length = 570

 Score =  430 bits (217), Expect = e-120
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtcttcagtgatggcatctgtgagtctcaaaccagctggtttcagtcttgagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   atggcgtcttcagtgatggcatctgtgagtctcaaaccagctggtttcagtcttgagaaa 65

                                                                       
Query: 61  tcctcagtgagaggacttccttccctttcaaggtcttctgcctccttcagagttgttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tcctcagtgagaggacttccttccctttcaaggtcttctgcctccttcagagttgttgca 125

                                                                       
Query: 121 tctggtggcaagaagattaaaactgacactccttatggaactggtggtggcatgaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tctggtggcaagaagattaaaactgacactccttatggaactggtggtggcatgaacttg 185

                                                
Query: 181 aggaatggagttgatgcatctggcaggaagccaaggg 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 186 aggaatggagttgatgcatctggcaggaagccaaggg 222


>gnl|LJGI|AV414034 homologue to UniRef100_Q2PXN6 Cluster: Chloroplast photosystem II
           10 kDa protein; n=1; Arachis hypogaea|Rep: Chloroplast
           photosystem II 10 kDa protein - Arachis hypogaea
           (Peanut), partial (24%)
          Length = 299

 Score =  190 bits (96), Expect = 5e-48
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                       
Query: 325 ggtacgactggcttggctatctgggctgtaactctacttggtcttctggctgggggagct 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggtacgactggcttggctatctgggctgtaactctacttggtcttctggctgggggagct 174

                                               
Query: 385 cttcttgtctacaacacaagtgctttgtcacaatag 420
           ||||||||||||||||||||||||||||||||||||
Sbjct: 173 cttcttgtctacaacacaagtgctttgtcacaatag 138