Miyakogusa Predicted Gene

Lj3g3v0965990.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0965990.1 tr|G7I290|G7I290_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_1g007450 PE=4
SV=1,45.31,3e-19,seg,NULL,gene.g46601.t1.1
         (459 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77125 weakly similar to UniRef100_A2Q228 Cluster: Cyc...    86   2e-16

>gnl|LJGI|TC77125 weakly similar to UniRef100_A2Q228 Cluster: Cyclin-like F-box; F-box
            protein interaction domain; n=1; Medicago truncatula|Rep:
            Cyclin-like F-box; F-box protein interaction domain -
            Medicago truncatula (Barrel medic), partial (32%)
          Length = 1362

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 156/194 (80%), Gaps = 6/194 (3%)
 Strand = Plus / Plus

                                                                        
Query: 192  aacttttcacatatcaattttaggtgaactcggtgtgaaggaatcgtggactaaactttt 251
            ||||||||||||||  ||||| ||||| ||| |||  |||||||| ||||||||||||||
Sbjct: 934  aacttttcacatatggattttgggtgagctctgtgcaaaggaatcatggactaaactttt 993

                                                                        
Query: 252  tattgttggac------ccttccctgacattggattacctattggagtgagtcaaaaggg 305
             | ||||||||      |||| | || | ||||  | |||||||||||  |  | | |||
Sbjct: 994  cactgttggacttggacccttgcatggctttgggcttcctattggagtagggaagatggg 1053

                                                                        
Query: 306  tgatatattcttcagaaaagaagcaggtgaactagccttgtttcatttaagtaaccatat 365
             |||||||||||||||||||||   |||||||||||||||||  |||||||||  |||||
Sbjct: 1054 cgatatattcttcagaaaagaaaatggtgaactagccttgttcgatttaagtactcatat 1113

                          
Query: 366  gctcgaggagattg 379
            |||| |||||||||
Sbjct: 1114 gctcaaggagattg 1127