Miyakogusa Predicted Gene
- Lj3g3v0965910.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0965910.1 tr|A9T314|A9T314_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_87421
,42.11,1e-18,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; no descripti,CUFF.41913.1
(1278 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60029 similar to UniRef100_A7PWS9 Cluster: Chromosome... 2135 0.0
gnl|LJGI|BW625886 similar to UniRef100_A7PWS9 Cluster: Chromosom... 377 e-103
gnl|LJGI|BP035374 similar to UniRef100_A7PWS9 Cluster: Chromosom... 325 4e-88
gnl|LJGI|TC78372 287 8e-77
>gnl|LJGI|TC60029 similar to UniRef100_A7PWS9 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (86%)
Length = 1567
Score = 2135 bits (1077), Expect = 0.0
Identities = 1080/1081 (99%)
Strand = Plus / Plus
Query: 160 ggcggttcccgcagccgcagccctcctcctcagcggcggaaaagtcctgttgaagcagct 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggcggttcccgcagccgcagccctcctcctcagcggcggaaaagtcctgttgaagcagct 310
Query: 220 aggcgaggtcgatctcctcctccttctaagagagcttcccctccttctaagagagcttct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggcgaggtcgatctcctcctccttctaagagagcttcccctccttctaagagagcttct 370
Query: 280 cctcccccaaggaaaccttctcctacacgtgaatcacttgttctgcacgtagaaaaactc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctcccccaaggaaaccttctcctacacgtgaatcacttgttctgcacgtagaaaaactc 430
Query: 340 agcaggaatgtcaatgaaggccatttgaaagaaattttcagtaactatggtgaggttgta 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agcaggaatgtcaatgaaggccatttgaaagaaattttcagtaactatggtgaggttgta 490
Query: 400 agtgtggagttggcgatggatcgaattgtgaatcttccaaaaggatatgcatatgtgcaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtgtggagttggcgatggatcgaattgtgaatcttccaaaaggatatgcatatgtgcaa 550
Query: 460 ttcaaggcaagaggggatgcagaaaaagcattgttgtacatggatggtgcccaaatagat 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttcaaggcaagaggggatgcagaaaaagcattgttgtacatggatggtgcccaaatagat 610
Query: 520 ggcaacgtcattaaggcaagatttactctacctccaagacagaaagtttcaccaccccct 579
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 611 ggcaacgtcattaaggcaagatttactctacttccaagacagaaagtttcaccaccccct 670
Query: 580 aagccttctgctcttgctccgaagagagaggcccctaggactgacaatgctggtgctgat 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aagccttctgctcttgctccgaagagagaggcccctaggactgacaatgctggtgctgat 730
Query: 640 attgaaaaggatgggccgaagcgtcaaagagaatcttctcctcggagaaaaccccctccc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 attgaaaaggatgggccgaagcgtcaaagagaatcttctcctcggagaaaaccccctccc 790
Query: 700 tcaccacggaggaggtctcccgtgcctcgaagagttggatctccaagacgaccagattct 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tcaccacggaggaggtctcccgtgcctcgaagagttggatctccaagacgaccagattct 850
Query: 760 cctcgccgtcgtgtggattctcctgtccgtcgtcgactagactctccttatcgtcgtgga 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cctcgccgtcgtgtggattctcctgtccgtcgtcgactagactctccttatcgtcgtgga 910
Query: 820 ggtgacacacctcctaggaggaggcctgtgtctcctggaagaggtcgctctccatctcca 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ggtgacacacctcctaggaggaggcctgtgtctcctggaagaggtcgctctccatctcca 970
Query: 880 ccaaggcgcctaagatcacctgcaagggtttcacctagaaggttgcgtggaagccctggt 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ccaaggcgcctaagatcacctgcaagggtttcacctagaaggttgcgtggaagccctggt 1030
Query: 940 cggagacgttctcctcctcctcctccaaggcgccgttcaccacctcctagacgagctcgt 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 cggagacgttctcctcctcctcctccaaggcgccgttcaccacctcctagacgagctcgt 1090
Query: 1000 agtcctcctagaaggtctcccatcggtcgtaggcgcagtcgctctccaatacgtaggcct 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 agtcctcctagaaggtctcccatcggtcgtaggcgcagtcgctctccaatacgtaggcct 1150
Query: 1060 gcacgctcaaactcaagatcattctcacctcgcagaggtcgaccacctgttagacggggg 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 gcacgctcaaactcaagatcattctcacctcgcagaggtcgaccacctgttagacggggg 1210
Query: 1120 agatcatcatccttctctgactcaccaagtccacggaaggtatctcggagatcaaggagt 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 agatcatcatccttctctgactcaccaagtccacggaaggtatctcggagatcaaggagt 1270
Query: 1180 cgcagtcctagaaggcctttgagaggaggaagagccagtagcaacagtagcagtagcagt 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 cgcagtcctagaaggcctttgagaggaggaagagccagtagcaacagtagcagtagcagt 1330
Query: 1240 t 1240
|
Sbjct: 1331 t 1331
Score = 103 bits (52), Expect = 3e-21
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 1 atggcgaaacctggccgaggccgtcgttcgccgccgtcgggttccgtttccg 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atggcgaaacctggccgaggccgtcgttcgccgccgtcgggttccgtttccg 143
>gnl|LJGI|BW625886 similar to UniRef100_A7PWS9 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 483
Score = 377 bits (190), Expect = e-103
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 160 ggcggttcccgcagccgcagccctcctcctcagcggcggaaaagtcctgttgaagcagct 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggcggttcccgcagccgcagccctcctcctcagcggcggaaaagtcctgttgaagcagct 353
Query: 220 aggcgaggtcgatctcctcctccttctaagagagcttcccctccttctaagagagcttct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aggcgaggtcgatctcctcctccttctaagagagcttcccctccttctaagagagcttct 413
Query: 280 cctcccccaaggaaaccttctcctacacgtgaatcacttgttctgcacgtagaaaaactc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctcccccaaggaaaccttctcctacacgtgaatcacttgttctgcacgtagaaaaactc 473
Query: 340 agcaggaatg 349
||||||||||
Sbjct: 474 agcaggaatg 483
Score = 103 bits (52), Expect = 3e-21
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 1 atggcgaaacctggccgaggccgtcgttcgccgccgtcgggttccgtttccg 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atggcgaaacctggccgaggccgtcgttcgccgccgtcgggttccgtttccg 186
>gnl|LJGI|BP035374 similar to UniRef100_A7PWS9 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 435
Score = 325 bits (164), Expect = 4e-88
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 1069 aactcaagatcattctcacctcgcagaggtcgaccacctgttagacgggggagatcatca 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aactcaagatcattctcacctcgcagaggtcgaccacctgttagacgggggagatcatca 376
Query: 1129 tccttctctgactcaccaagtccacggaaggtatctcggagatcaaggagtcgcagtcct 1188
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 375 tccttctctgactcaccaagtccccggaaggtatctcggagatcaaggagtcgcagtcct 316
Query: 1189 agaaggcctttgagaggaggaagagccagtagcaacagtagcagtagcagtt 1240
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 agaaggcctttgagaggaggaagagccagtagcgacagtagcagtagcagtt 264
>gnl|LJGI|TC78372
Length = 541
Score = 287 bits (145), Expect = 8e-77
Identities = 148/149 (99%)
Strand = Plus / Plus
Query: 1092 cagaggtcgaccacctgttagacgggggagatcatcatccttctctgactcaccaagtcc 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 cagaggtcgaccacctgttagacgggggagatcatcatccttctctgactcaccaagtcc 110
Query: 1152 acggaaggtatctcggagatcaaggagtcgcagtcctagaaggcctttgagaggaggaag 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ccggaaggtatctcggagatcaaggagtcgcagtcctagaaggcctttgagaggaggaag 170
Query: 1212 agccagtagcaacagtagcagtagcagtt 1240
|||||||||||||||||||||||||||||
Sbjct: 171 agccagtagcaacagtagcagtagcagtt 199