Miyakogusa Predicted Gene
- Lj3g3v0965630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0965630.1 tr|B9SHS2|B9SHS2_RICCO DNA-directed RNA
polymerase OS=Ricinus communis GN=RCOM_0620590 PE=3
SV=1,90,0.0000000000003,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; RNA_pol_Rpb2_6,DNA-directed RNA p,CUFF.41883.1
(405 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67559 similar to UniRef100_A7QMF0 Cluster: DNA-direct... 755 0.0
gnl|LJGI|TC73833 similar to UniRef100_A7QMF0 Cluster: DNA-direct... 557 e-158
gnl|LJGI|BP075578 similar to UniRef100_UPI00005DC295 Cluster: NR... 295 1e-79
gnl|LJGI|CB827138 similar to UniRef100_A2XHT0 Cluster: DNA-direc... 133 9e-31
>gnl|LJGI|TC67559 similar to UniRef100_A7QMF0 Cluster: DNA-directed RNA polymerase;
n=4; core eudicotyledons|Rep: DNA-directed RNA
polymerase - Vitis vinifera (Grape), partial (12%)
Length = 658
Score = 755 bits (381), Expect = 0.0
Identities = 399/405 (98%)
Strand = Plus / Plus
Query: 1 atggggccaatatactaccagaaattaaaacatatggtgcttgataagatgcatgcccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 atggggccaatatactaccagaaattaaaacatatggtgcttgataagatgcatgcccgt 82
Query: 61 ggtaatggccctcgtaactcgctacatagacagcctacagaagggaaagctagaaatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ggtaatggccctcgtaactcgctacatagacagcctacagaagggaaagctagaaatgga 142
Query: 121 ggtctacgaattggagaaatggaacgtgattgcttaattgcgtatggtgcgagtatgttg 180
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 143 ggtctacgaattggagaaatggaacgcgattgcttaattgcgtacggtgctagtatgttg 202
Query: 181 atttttgagcgactcatgttatctagtgatccttttgaagttcaggtctgtagatcgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 atttttgagcgactcatgttatctagtgatccttttgaagttcaggtctgtagatcgtgt 262
Query: 241 gggttgttaggatattacaactataagttgaaaattggtgtttgtccatcatgtaagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggttgttaggatattacaactataagttgaaaattggtgtttgtccatcatgtaagaat 322
Query: 301 ggagaccagatttctaacatgaagctaccatatgcatgcaaactcttgattcaggaactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagaccagatttctaacatgaagctaccatatgcatgcaaactcttgattcaggaactc 382
Query: 361 caatcaatgaatattgttccccgcttaaaactggaagaaccctga 405
||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 383 caatcaatgaacattgttccccgcttaaaactggcagatccctga 427
>gnl|LJGI|TC73833 similar to UniRef100_A7QMF0 Cluster: DNA-directed RNA polymerase;
n=4; core eudicotyledons|Rep: DNA-directed RNA
polymerase - Vitis vinifera (Grape), partial (10%)
Length = 570
Score = 557 bits (281), Expect = e-158
Identities = 347/369 (94%)
Strand = Plus / Plus
Query: 35 tggtgcttgataagatgcatgcccgtggtaatggccctcgtaactcgctacatagacagc 94
|||||||||||||||||| |||||||||||| ||||||||| ||| ||| ||||||||
Sbjct: 1 tggtgcttgataagatgcgtgcccgtggtaacggccctcgtgactttctaactagacagc 60
Query: 95 ctacagaagggaaagctagaaatggaggtctacgaattggagaaatggaacgtgattgct 154
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||
Sbjct: 61 ctacagaagggaaagctatatatggaggtctacgaattggagaaagggaacgtgattcct 120
Query: 155 taattgcgtatggtgcgagtatgttgatttttgagcgactcatgttatctagtgatcctt 214
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 taattgcgtatggtgctagtatgttgatttttgagcgactcatgctatctagtgatcctt 180
Query: 215 ttgaagttcaggtctgtagatcgtgtgggttgttaggatattacaactataagttgaaaa 274
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 181 ttgaagttcaggtctgtagatcgtgtgggctgttaggatattacaactatgagttgaaaa 240
Query: 275 ttggtgtttgtccatcatgtaagaatggagaccagatttctaacatgaagctaccatatg 334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggtgtttgtccatcatgtaagaatggagaccagatttctaacatgaagctaccatatg 300
Query: 335 catgcaaactcttgattcaggaactccaatcaatgaatattgttccccgcttaaaactgg 394
||||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct: 301 catgccaactcttgattcaggagctcccatcaatgaacattgttccccgcttaaaactgg 360
Query: 395 aagaaccct 403
||| ||||
Sbjct: 361 cagatccct 369
>gnl|LJGI|BP075578 similar to UniRef100_UPI00005DC295 Cluster: NRPC2 (nuclear RNA
polymerase C 2); DNA binding / DNA-directed RNA
polymerase; n=1; Arabidopsis thaliana|Rep: NRPC2
(nuclear RNA polymerase C 2); DNA binding / DNA-directed
RNA polymerase - Arabidopsis thaliana, partial (5%)
Length = 506
Score = 295 bits (149), Expect = 1e-79
Identities = 173/181 (95%)
Strand = Plus / Minus
Query: 223 caggtctgtagatcgtgtgggttgttaggatattacaactataagttgaaaattggtgtt 282
||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||
Sbjct: 358 caggtctgtagatcgtgtgggctgttaggatattacaactatgagttgaaaactggtgtt 299
Query: 283 tgtccatcatgtaagaatggagaccagatttctaacatgaagctaccatatgcatgcaaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgtccatcatgtaagaatggagaccagatttctaacatgaagctaccatatgcatgcaaa 239
Query: 343 ctcttgattcaggaactccaatcaatgaatattgttccccgcttaaaactggaagaaccc 402
|||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||| |||
Sbjct: 238 ctcttgattcaggagctccaatccatgaacattgttccccgcttaaaactggcagatccc 179
Query: 403 t 403
|
Sbjct: 178 t 178
>gnl|LJGI|CB827138 similar to UniRef100_A2XHT0 Cluster: DNA-directed RNA polymerase;
n=1; Oryza sativa Indica Group|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. indica (Rice), partial
(3%)
Length = 260
Score = 133 bits (67), Expect = 9e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 153 cttaattgcgtatggtgcgagtatgttgatttttgagcgactcatgttatctagtgatcc 212
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3 cttaattgcgtatggtgctagtatgttgatttttgagcgactcatgctatctagtgatcc 62
Query: 213 ttttgaagttcaggt 227
|||||||||||||||
Sbjct: 63 ttttgaagttcaggt 77