Miyakogusa Predicted Gene
- Lj3g3v0937880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0937880.1 Non Chatacterized Hit- tr|I1KTU7|I1KTU7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.32,0,MITOCHONDRIAL
DEAD BOX PROTEIN, PUTATIVE,NULL; FAMILY NOT NAMED,NULL; seg,NULL;
DEAD,DNA/RNA helicas,CUFF.41681.1
(1624 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS337066 similar to UniRef100_Q8W4E1 Cluster: DEAD-box ... 1259 0.0
gnl|LJGI|TC66186 similar to UniRef100_Q8W4E1 Cluster: DEAD-box A... 1001 0.0
gnl|LJGI|TC62970 similar to UniRef100_Q8W4E1 Cluster: DEAD-box A... 428 e-119
>gnl|LJGI|FS337066 similar to UniRef100_Q8W4E1 Cluster: DEAD-box ATP-dependent RNA
helicase 47; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 47 - Arabidopsis thaliana
(Mouse-ear cress), partial (19%)
Length = 773
Score = 1259 bits (635), Expect = 0.0
Identities = 638/639 (99%)
Strand = Plus / Plus
Query: 1 atgagaagggcattggccacttctaggtttgcttggtttcacagtagtgtccattgtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atgagaagggcattggccacttctaggtttgcttggtttcacagtagtgtccattgtagg 194
Query: 61 agccaggtggaaccccatcatggttccctcactctttcaagcattggacttcatagtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agccaggtggaaccccatcatggttccctcactctttcaagcattggacttcatagtgaa 254
Query: 121 acagcagcagcatcaaataagcctaataagccattaggttccacctctgaatctctcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acagcagcagcatcaaataagcctaataagccattaggttccacctctgaatctctcaag 314
Query: 181 aacaaaggaaagccatttggcagtaatgagagggaaccagttagggttatagagaaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aacaaaggaaagccatttggcagtaatgagagggaaccagttagggttatagagaaacaa 374
Query: 241 cagcaaatagagcctgccccttttgctgccaagtcattttcagaacttggccttcctaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagcaaatagagcctgccccttttgctgccaagtcattttcagaacttggccttcctaat 434
Query: 301 gtgttggttgagaggctaaaaaatgagggtttcgcggttccaacagaggttcagtgtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtgttggttgagaggctaaaaaatgagggtttcgcggttccaacagaggttcagtgtgct 494
Query: 361 gcagttcctaccattctgaagaaccatgatgttatcattaagtcttggaaaggttcaggg 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 495 gcagttcctaccattctgaagaaccatgatgttatcattgagtcttggaaaggttcaggg 554
Query: 421 aaaacattggcttatctccttcctattttatctgctattgggccactcaggaataagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaaacattggcttatctccttcctattttatctgctattgggccactcaggaataagttt 614
Query: 481 cctcaaggagatggcgatggtggtgagcctgcgaagaaattgggaatagaagcattgatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cctcaaggagatggcgatggtggtgagcctgcgaagaaattgggaatagaagcattgatt 674
Query: 541 gttgctccttcgagggagattggaatgcagatagtgatggaacttgaaaagatactagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gttgctccttcgagggagattggaatgcagatagtgatggaacttgaaaagatactagga 734
Query: 601 agcgataacaagagagtggttcagcagttagtgggaggc 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agcgataacaagagagtggttcagcagttagtgggaggc 773
>gnl|LJGI|TC66186 similar to UniRef100_Q8W4E1 Cluster: DEAD-box ATP-dependent RNA
helicase 47; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 47 - Arabidopsis thaliana
(Mouse-ear cress), partial (36%)
Length = 996
Score = 1001 bits (505), Expect = 0.0
Identities = 673/729 (92%)
Strand = Plus / Plus
Query: 885 ggctgagcaccagttaataatggtttctgcaactgtgtcgtcctctgttgtaagtgcagc 944
||||| || ||||||||| |||||||||||||||||| | | ||||||||||| |||||
Sbjct: 1 ggctgtgcgccagttaattatggtttctgcaactgtgccattttctgttgtaagagcagc 60
Query: 945 taggagctggggttgtgacccgcttcttgtccgagataacaaggttgtcccacttgaaac 1004
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 61 taggagctggggttgtgacccacttcttgtccgagctaacaaagttgtcccacttgaaac 120
Query: 1005 cgtgactcccgctgagcctgtcaaattggcaatatcttcagccagctccagtcctaactc 1064
|||| |||| ||||||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 121 cgtgtctcctgctgagcctatcaaattgtcaatatcttcacccagctccagtgctaactc 180
Query: 1065 atccatgccatctcaggcagcagtagagagtctacctccagcattgaagcactattactg 1124
|||||||| | ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 181 atccatgcaaactcaggcagcagttgagagtctacctccagcgttgaagcactattactg 240
Query: 1125 tgtagtaaggttgcagcacaaggttgatacattgagaaggtgtatttatgcgctgcacgc 1184
|| || ||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 241 cgttgttaggttgcagcacaaggttgatacattgagaaggtgtattcatgcgctggatgc 300
Query: 1185 caaatatgtgatagctttcatgaaccatactaagcagctaaaagatgttgtttgcaagct 1244
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 301 caaatatgtgatagctttcatgaaccatactaagcagctaaaggatgttgttttcaagct 360
Query: 1245 ggaggcccgtgggatgaaagctgccgagttacatggggatcttggggagcttgcgaggtc 1304
|||||||||||| |||| ||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 361 ggaggcccgtggaatgacagccacagagttacatggggatcttgggaagcttgcgaggtc 420
Query: 1305 aacaattctgaagaaattcaagaatggtgatgtgagagttctggtgacaactgaattatc 1364
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 421 aacaactctgaagaaattcaagaatggtgaggtgagagttctggtgacaaatgaattatc 480
Query: 1365 agcaaggggtctggatgtggcaaaatgcgatcttgtggttaatctggagttgcctacgga 1424
||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||
Sbjct: 481 tgcaaggggtctggatgtggcagaatgtgatcttgtggttaatctggaattacctacgga 540
Query: 1425 ttcaattcactatgctcaccgagctggccgaattggtcggcttggtaggaatggaacagt 1484
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 541 ttcaattcactatgctcaccgggctggccgaactggtcggcttggtaggaatggaacagt 600
Query: 1485 gctaaccatatgcaaagatccagaagtttttgttctgaagaaattgcagaagcagcttgg 1544
|||||| |||||| |||| || |||||||||||| |||||||||||||||||||||||||
Sbjct: 601 gctaactatatgcgaagagcctgaagtttttgttgtgaagaaattgcagaagcagcttgg 660
Query: 1545 aataccaataccatgttgtgatattgcagagagaaagctggttgttactgcagaagataa 1604
||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||||| ||
Sbjct: 661 aataccaataccatgttgtgatattacagagggaaagctggttgtcactgaagaagagaa 720
Query: 1605 agcactaag 1613
|| ||||||
Sbjct: 721 agtactaag 729
>gnl|LJGI|TC62970 similar to UniRef100_Q8W4E1 Cluster: DEAD-box ATP-dependent RNA
helicase 47; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 47 - Arabidopsis thaliana
(Mouse-ear cress), partial (13%)
Length = 745
Score = 428 bits (216), Expect = e-119
Identities = 429/500 (85%), Gaps = 15/500 (3%)
Strand = Plus / Plus
Query: 1 atgagaagggcattggccacttctaggtttgcttggtttcacagtagtgtccattgtagg 60
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 242 atgagaagggttttggccaattctaggtttgcttggtttcacagtagtgtccattgtatg 301
Query: 61 agccaggtggaaccccatcatggttccctcactctttcaagcattggacttcatagtgaa 120
||| || ||||||||||||||||||| ||||||||||| ||||||| |||| ||||||
Sbjct: 302 agcaagttggaaccccatcatggttctctcactctttctagcattgatgttcaaagtgaa 361
Query: 121 a-------cagcagcagcatcaaat-----aagcctaataagccattaggttccacctct 168
|| | ||| | ||||| |||||| ||||| |||| ||||| |||||
Sbjct: 362 gttgaccccaagaacagaaccaaattgaataagccttataaggcattgagttcctcctct 421
Query: 169 gaatctctcaagaacaaaggaaagccatttggcagtaatgagagggaaccagttagggtt 228
|| || |||||||||||||||||||| ||||| | |||||||||| ||||||||||||||
Sbjct: 422 gagtccctcaagaacaaaggaaagccctttggtaataatgagaggaaaccagttagggtt 481
Query: 229 atagagaaacaacagcaaatagagcctgccccttttgctgccaagtcattttcagaactt 288
|||| ||||| |||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct: 482 ttagataaaca---gcaaatagagtctgccccttttgctgcagagtcattttcggaactt 538
Query: 289 ggccttcctaatgtgttggttgagaggctaaaaaatgagggtttcgcggttccaacagag 348
|||||||| ||||||||| |||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 539 ggccttccgaatgtgttgattgacaggctggaaaatgagggtttcaccgttccaacagag 598
Query: 349 gttcagtgtgctgcagttcctaccattctgaagaaccatgatgttatcattaagtcttgg 408
||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct: 599 gttcagtctgctgcagttcctaccattctgaaggaccatgatgtcatcattcagtcttac 658
Query: 409 aaaggttcagggaaaacattggcttatctccttcctattttatctgctattgggccactc 468
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 659 actggttcagggaaaacattggcttatctccttcctatattatctgctatcgggccacta 718
Query: 469 aggaataagtttcctcaagg 488
||||| || ||||||||||
Sbjct: 719 aggaacaaagttcctcaagg 738