Miyakogusa Predicted Gene

Lj3g3v0936580.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0936580.1 Non Chatacterized Hit- tr|A2Q3A8|A2Q3A8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,73.88,0,DUF946,Vacuolar protein sorting-associated protein
62; PRE-MRNA PROCESSING-RELATED,NULL; PRE-MRNA PR,CUFF.41657.1
         (1746 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72947 weakly similar to UniRef100_A7QR76 Cluster: Chr...  2807   0.0  
gnl|LJGI|TC76424 weakly similar to UniRef100_O64861 Cluster: Exp...   125   1e-27
gnl|LJGI|TC73903 similar to UniRef100_A7QR76 Cluster: Chromosome...    56   8e-07

>gnl|LJGI|TC72947 weakly similar to UniRef100_A7QR76 Cluster: Chromosome chr13
            scaffold_149, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr13 scaffold_149, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (68%)
          Length = 1473

 Score = 2807 bits (1416), Expect = 0.0
 Identities = 1432/1436 (99%), Gaps = 1/1436 (0%)
 Strand = Plus / Plus

                                                                        
Query: 312  tgaacccaaagacacacctcaaggattctctatgttgggtagctatggccaacccaacaa 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2    tgaacccaaagacacacctcaaggattctctatgttgggtagctatggccaacccaacaa 61

                                                                        
Query: 372  ccagcctctttttggatggattcttgtggcaaaggatgtgtcttcaacttcaagtgcctt 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   ccagcctctttttggatggattcttgtggcaaaggatgtgtcttcaacttcaagtgcctt 121

                                                                        
Query: 432  aaagaaaccacttgattacacacttgtatggaacagtgcatcagtgaaagtttctcaaga 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  aaagaaaccacttgattacacacttgtatggaacagtgcatcagtgaaagtttctcaaga 181

                                                                        
Query: 492  ttctcctggctatgtttggctaccaaaagcacctgatgggtacaaagctttaggccatgt 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  ttctcctggctatgtttggctaccaaaagcacctgatgggtacaaagctttaggccatgt 241

                                                                        
Query: 552  tgtcaccaccacacctgataaaccttcccttgacaaaatcaagtgtgtcaggcaagacct 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  tgtcaccaccacacctgataaaccttcccttgacaaaatcaagtgtgtcaggcaagacct 301

                                                                        
Query: 612  cactgaacaatgtgaggcctattcatggatttggggaacaggaggagacagtgatccaaa 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  cactgaacaatgtgaggcctattcatggatttggggaacaggaggagacagtgatccaaa 361

                                                                        
Query: 672  tagcttcaatttctatgcagttaggccaagcaatagaggaactcaagctcttggtgttgg 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  tagcttcaatttctatgcagttaggccaagcaatagaggaactcaagctcttggtgttgg 421

                                                                        
Query: 732  tgtaggagcctttgttgcacaaaatggtgggactaatagctctttatccatcacctgttt 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  tgtaggagcctttgttgcacaaaatggtgggactaatagctctttatccatcacctgttt 481

                                                                        
Query: 792  gaaaaacaccaatgctatttcaaaatctatgcctaatctaaaacaaattggtgcattact 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  gaaaaacaccaatgctatttcaaaatctatgcctaatctaaaacaaattggtgcattact 541

                                                                        
Query: 852  ccaaacttattctccaattttatacttgcaccctgatgaagaatttcaaccttcctctgt 911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  ccaaacttattctccaattttatacttgcaccctgatgaagaatttcaaccttcctctgt 601

                                                                        
Query: 912  ggattggtttttctccaatggagcattactgtaccagagagggaaagagtcaaatcctgt 971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  ggattggtttttctccaatggagcattactgtaccagagagggaaagagtcaaatcctgt 661

                                                                        
Query: 972  gaagatagcaccaaatggaaccaaccttcctcaggatcctcacactgatggtgcctattg 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  gaagatagcaccaaatggaaccaaccttcctcaggatcctcacactgatggtgcctattg 721

                                                                        
Query: 1032 gcttgatctccctgctgatgcagacaacaaagagagggttaaaaaaggagatttgcaaag 1091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  gcttgatctccctgctgatgcagacaacaaagagagggttaaaaaaggagatttgcaaag 781

                                                                        
Query: 1092 ttttgaatcttatgtacatgtgaagccaatgcttggaggaaccttcactgatttagccat 1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  ttttgaatcttatgtacatgtgaagccaatgcttggaggaaccttcactgatttagccat 841

                                                                        
Query: 1152 gtgggtcttctaccctttcaatggaccagcaagagcaaaagtggagttctttaacgtcaa 1211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  gtgggtcttctaccctttcaatggaccagcaagagcaaaagtggagttctttaacgtcaa 901

                                                                        
Query: 1212 attggggaggattggtgaacatgttggtgattgggaacatgtcacattaaggatcagcaa 1271
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 902  attggggaggattggtgaacatgttggtgattgggagcatgtcacattaaggatcagcaa 961

                                                                        
Query: 1272 ttttgatggtcaattatggaaagtctatttcgcacaacatagcaaaggtgcatgggttga 1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  ttttgatggtcaattatggaaagtctatttcgcacaacatagcaaaggtgcatgggttga 1021

                                                                        
Query: 1332 ttcctctcagattgagttcc-aaagtgacaacaatgtcaataggcctgtggtttattctt 1390
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 ttcctctcagattgagttccaaaagtgacaacaatgtcaataggcctgtggtttattctt 1081

                                                                        
Query: 1391 ctttacatggacatgcttcataccctcatcctggtcttattctgcaagggaaaaatggaa 1450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 ctttacatggacatgcttcataccctcatcctggtcttattctgcaagggaaaaatggaa 1141

                                                                        
Query: 1451 ttggtataaggaatgacactgcaaagagtgcaagtgtattggatatgaggaaatgtgtgt 1510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 ttggtataaggaatgacactgcaaagagtgcaagtgtattggatatgaggaaatgtgtgt 1201

                                                                        
Query: 1511 tgatttcaacagagtatttggggtcttctgctgttgtggagcctccatggctgaactatt 1570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 tgatttcaacagagtatttggggtcttctgctgttgtggagcctccatggctgaactatt 1261

                                                                        
Query: 1571 tcagggaatgggggccaaaaattgattataatattgatgatgagttgaagaaagtggaga 1630
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1262 tcagggaatgggggccaaaaattgattgtaatattgatgatgagttgaagaaagtggaga 1321

                                                                        
Query: 1631 agtttttgcctgggaagttgaaaactgcttttgaaaatattataaagagtttgccaaatg 1690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 agtttttgcctgggaagttgaaaactgcttttgaaaatattataaagagtttgccaaatg 1381

                                                                    
Query: 1691 aagtgctgggagaggaaggaccaacaggtccaaaggctaagaataattggagtggg 1746
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1382 aagtgctgggagaggaaggaccaacaggcccaaaggctaagaataattggagtggg 1437


>gnl|LJGI|TC76424 weakly similar to UniRef100_O64861 Cluster: Expressed protein; n=1;
           Arabidopsis thaliana|Rep: Expressed protein -
           Arabidopsis thaliana (Mouse-ear cress), partial (26%)
          Length = 782

 Score =  125 bits (63), Expect = 1e-27
 Identities = 126/147 (85%)
 Strand = Plus / Plus

                                                                       
Query: 502 tatgtttggctaccaaaagcacctgatgggtacaaagctttaggccatgttgtcaccacc 561
           ||||||||| |||||| |||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 453 tatgtttggttaccaacagcacctgatggctataaatccttaggccatgttgtcaccacc 512

                                                                       
Query: 562 acacctgataaaccttcccttgacaaaatcaagtgtgtcaggcaagacctcactgaacaa 621
           ||| | || || ||||||||||||| ||||| ||||||||||  ||| ||||| || |||
Sbjct: 513 acagcagagaagccttcccttgacagaatcaggtgtgtcaggtcagatctcacagaccaa 572

                                      
Query: 622 tgtgaggcctattcatggatttgggga 648
           |||||| |  | |||||||||||||||
Sbjct: 573 tgtgagacaaactcatggatttgggga 599


>gnl|LJGI|TC73903 similar to UniRef100_A7QR76 Cluster: Chromosome chr13 scaffold_149,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr13 scaffold_149, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (46%)
          Length = 1053

 Score = 56.0 bits (28), Expect = 8e-07
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1108 catgtgaagccaatgcttggaggaaccttcactgatttagccatgtgggtcttctaccct 1167
            |||||||| || ||| |||| ||||| ||||||||| ||||||||||| | ||||| || 
Sbjct: 168  catgtgaaacccatgtttggtggaacattcactgatctagccatgtggattttctatcca 227

                    
Query: 1168 ttcaatgg 1175
            ||||||||
Sbjct: 228  ttcaatgg 235