Miyakogusa Predicted Gene
- Lj3g3v0931330.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0931330.1 tr|A9TLA7|A9TLA7_PHYPA DNA polymerase
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60547
PE=,46.3,1e-18,Ribonuclease H-like,Ribonuclease H-like domain;
seg,NULL; DNA POLYMERASE ALPHA CATALYTIC SUBUNIT,NUL,CUFF.41631.1
(1347 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67710 similar to UniRef100_A7PLB6 Cluster: DNA polyme... 1796 0.0
gnl|LJGI|TC67300 similar to UniRef100_A7PLB6 Cluster: DNA polyme... 289 2e-77
>gnl|LJGI|TC67710 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis
vinifera|Rep: DNA polymerase - Vitis vinifera (Grape),
partial (8%)
Length = 963
Score = 1796 bits (906), Expect = 0.0
Identities = 906/906 (100%)
Strand = Plus / Plus
Query: 1 atggctgatgacgacggttcccggaagcgaaggcccaccagaggccccgaatccaccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atggctgatgacgacggttcccggaagcgaaggcccaccagaggccccgaatccaccgcc 117
Query: 61 cgcagccaagccttagagcgcctcaaggcccgccttggcggcggccgcagatctgacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cgcagccaagccttagagcgcctcaaggcccgccttggcggcggccgcagatctgacccc 177
Query: 121 gccggaccccaaatcaagttagaaaaccctatctacgacaccgtccccgaagacgagtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gccggaccccaaatcaagttagaaaaccctatctacgacaccgtccccgaagacgagtac 237
Query: 181 aacgctctcgtcgcgaagcgccgcgagcaagcgcaggatttcatcgtcgacgatgacggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aacgctctcgtcgcgaagcgccgcgagcaagcgcaggatttcatcgtcgacgatgacggc 297
Query: 241 ctcgggtacggggatcaaggtcaggaagaggattggtccaaagcaggctacactctctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctcgggtacggggatcaaggtcaggaagaggattggtccaaagcaggctacactctctca 357
Query: 301 tccggagacgaatccgatggcggtggcgagaaggcggaaaagccgaagcggaagaaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tccggagacgaatccgatggcggtggcgagaaggcggaaaagccgaagcggaagaaggat 417
Query: 361 cctcagatcaaacggccttctgcttcttcagtgtcactctccgccgccgcagctatgatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cctcagatcaaacggccttctgcttcttcagtgtcactctccgccgccgcagctatgatc 477
Query: 421 ggcgcgcagaggctgtcgtcgatgttcacttcctcgaatttcaagaagaatagggatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggcgcgcagaggctgtcgtcgatgttcacttcctcgaatttcaagaagaatagggatgag 537
Query: 481 aaggctagtgagagcattgttgatgatgttattgcggagtttgcaccggatgagaatgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaggctagtgagagcattgttgatgatgttattgcggagtttgcaccggatgagaatgat 597
Query: 541 aggctgaggcgaagaaaggcgcaaccgaatccgtcggcatactctcccggagaatctctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aggctgaggcgaagaaaggcgcaaccgaatccgtcggcatactctcccggagaatctctt 657
Query: 601 agggttaagccatgtactactaattcaattagggcttctccggtgtctggtaatttctca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agggttaagccatgtactactaattcaattagggcttctccggtgtctggtaatttctca 717
Query: 661 attgacggcggcaccgcgaaaccggttagggctaatgagagcaatggtagtgaattgggg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 attgacggcggcaccgcgaaaccggttagggctaatgagagcaatggtagtgaattgggg 777
Query: 721 gtagagctaaagtttgaagaagcagctgaactgaatggaaattctgaaaatgttcaggcg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gtagagctaaagtttgaagaagcagctgaactgaatggaaattctgaaaatgttcaggcg 837
Query: 781 cagccggaaacgatgcaaattgatgattttcccagtaatgagggtttgagtgaggataaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cagccggaaacgatgcaaattgatgattttcccagtaatgagggtttgagtgaggataaa 897
Query: 841 gtggtgaaggacattgagatggaagaaaaaccagctctgaaaaaagaggttttcactttg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gtggtgaaggacattgagatggaagaaaaaccagctctgaaaaaagaggttttcactttg 957
Query: 901 aatgcg 906
||||||
Sbjct: 958 aatgcg 963
>gnl|LJGI|TC67300 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis
vinifera|Rep: DNA polymerase - Vitis vinifera (Grape),
partial (5%)
Length = 578
Score = 289 bits (146), Expect = 2e-77
Identities = 223/249 (89%), Gaps = 6/249 (2%)
Strand = Plus / Plus
Query: 3 ggctgatgacgacggttcccggaagcgaaggcccaccagaggccccgaatccaccgcccg 62
||||||||| || | |||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 1 ggctgatgatgaagcttccaggaagcgaaggaccaccagaggccccgaagccaccgcccg 60
Query: 63 cagccaagccttagagcgcctcaaggcccgccttggcggcggccgcagatctgaccccgc 122
|||||||||||| |||| ||| || ||| ||| |||||| |||||||||||||||| |||
Sbjct: 61 cagccaagccttggagctccttaaagcctgccgtggcggtggccgcagatctgacctcgc 120
Query: 123 cggaccccaaatcaagttagaaaaccctatctacgacaccgtccccgaagacgagtacaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cggaccccaaatcaagttagaaaaccctatctacgacaccgtccccgaagacgagtacaa 180
Query: 183 cg------ctctcgtcgcgaagcgccgcgagcaagcgcaggatttcatcgtcgacgatga 236
|| | |||| ||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 181 cgccctccccctcgccgccaagcgccgcgagcaagcgcaagatttcatcgtcgatgatga 240
Query: 237 cggcctcgg 245
||||||||
Sbjct: 241 tggcctcgg 249
Score = 190 bits (96), Expect = 2e-47
Identities = 164/187 (87%), Gaps = 6/187 (3%)
Strand = Plus / Plus
Query: 370 aaacggccttctgcttcttcagtgtcactctccgccgccgcagctatgatcggcgcgcag 429
||||||||||||| ||||||| |||||||||||||||||||| |||| |||||
Sbjct: 326 aaacggccttctgtttcttcatcatcactctccgccgccgcagc------cggcacgcag 379
Query: 430 aggctgtcgtcgatgttcacttcctcgaatttcaagaagaatagggatgagaaggctagt 489
||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| ||
Sbjct: 380 aggctgtcgtccatgttcacttcctcgaatttcaagaagaaaagggacgacaaggccagc 439
Query: 490 gagagcattgttgatgatgttattgcggagtttgcaccggatgagaatgataggctgagg 549
|||||||| |||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 440 gagagcatcgttgatgacgttattgcagagttcgcaccggatgagaacgataggctgagg 499
Query: 550 cgaagaa 556
|| ||||
Sbjct: 500 cgcagaa 506