Miyakogusa Predicted Gene

Lj3g3v0928110.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0928110.1 tr|D7KSJ4|D7KSJ4_ARALL Zinc finger family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_,48.39,1e-18,RING/U-box,NULL; no description,Zinc
finger, RING/FYVE/PHD-type; Ring finger,Zinc finger,
RING-type;,CUFF.41620.1
         (1039 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW628715                                                     107   1e-22
gnl|LJGI|AV424688 weakly similar to UniRef100_A7QRA0 Cluster: Ch...    52   7e-06

>gnl|LJGI|BW628715 
          Length = 472

 Score =  107 bits (54), Expect = 1e-22
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1   atggatcagcagcctttgtacccgattcaagagcgcctcaggatccttgaagga 54
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggatcagcagcctttgtacccgattcaagagcgcctcaggatccttgaagga 378



 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 54  aactacctctaccggagaatcggttacagtagata 88
           |||||||||||||||||||||||||||||||||||
Sbjct: 438 aactacctctaccggagaatcggttacagtagata 472


>gnl|LJGI|AV424688 weakly similar to UniRef100_A7QRA0 Cluster: Chromosome chr13
           scaffold_149, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr13 scaffold_149, whole
           genome shotgun sequence - Vitis vinifera (Grape),
           partial (6%)
          Length = 414

 Score = 52.0 bits (26), Expect = 7e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 366 tgcaaaggaatgccctgtctgtaaaggagaggtcactgaagc 407
           ||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct: 14  tgcaagggaatgccctgtttgtaatggagaggttactgaagc 55