Miyakogusa Predicted Gene
- Lj3g3v0883690.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0883690.1 Non Chatacterized Hit- tr|B8LMB6|B8LMB6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,31.63,4e-18,seg,NULL; RRM,RNA recognition motif domain; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no desc,CUFF.41594.1
(726 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72983 similar to UniRef100_A7QWX5 Cluster: Chromosome... 1439 0.0
gnl|LJGI|BP033405 homologue to UniRef100_A7QWX5 Cluster: Chromos... 315 2e-85
>gnl|LJGI|TC72983 similar to UniRef100_A7QWX5 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (77%)
Length = 1131
Score = 1439 bits (726), Expect = 0.0
Identities = 726/726 (100%)
Strand = Plus / Plus
Query: 1 atggctgctttgcactcttatctgctcacaccacccaatcttctctccctcacaactcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 atggctgctttgcactcttatctgctcacaccacccaatcttctctccctcacaactcca 127
Query: 61 tcttcttccacaaccagcaacctgcaaccccgtcatctcaggttggcgccttctctcgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tcttcttccacaaccagcaacctgcaaccccgtcatctcaggttggcgccttctctcgca 187
Query: 121 cgcccactccgtttacgaagaccctttgcggtggcggagcaagctgcggccacccaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cgcccactccgtttacgaagaccctttgcggtggcggagcaagctgcggccacccaatct 247
Query: 181 gaggctgaccggagactctacgttggcaacattcctcgcactctcaccaacgatgagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaggctgaccggagactctacgttggcaacattcctcgcactctcaccaacgatgagctt 307
Query: 241 gcaaacattgttcaagaacatgctgctgttgagaaagcagaggtcatgtatgataaatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaaacattgttcaagaacatgctgctgttgagaaagcagaggtcatgtatgataaatac 367
Query: 301 tctggaaggagccgtcgctttgcatttgttactgtgaaaactgttgaggatgcaaatgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tctggaaggagccgtcgctttgcatttgttactgtgaaaactgttgaggatgcaaatgca 427
Query: 361 gcaattgagaaacttaacggcacacaaattggaggacgtgagattaaagtaaatgtaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcaattgagaaacttaacggcacacaaattggaggacgtgagattaaagtaaatgtaact 487
Query: 421 gaaaaacctttaacgacagtagattttcctctagtccaggctgaggaatccgaatatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaaaaacctttaacgacagtagattttcctctagtccaggctgaggaatccgaatatgtt 547
Query: 481 gacagtccctacaaggtatatgtgggaaatctggctaagacagttacaagtgatatgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gacagtccctacaaggtatatgtgggaaatctggctaagacagttacaagtgatatgctc 607
Query: 541 aaaaactttttctctgagaagggaaaagtgcttagtgccaaggtttcacgggttcctggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaaaactttttctctgagaagggaaaagtgcttagtgccaaggtttcacgggttcctggg 667
Query: 601 acctcaaagtccagtggctttggttttgttactttttcatcagatgaggatgtagaagct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acctcaaagtccagtggctttggttttgttactttttcatcagatgaggatgtagaagct 727
Query: 661 gcaatctcatccttcaacaatgctccattggaaggacaaaaaattcgtgtgaataaggcg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gcaatctcatccttcaacaatgctccattggaaggacaaaaaattcgtgtgaataaggcg 787
Query: 721 tagaga 726
||||||
Sbjct: 788 tagaga 793
>gnl|LJGI|BP033405 homologue to UniRef100_A7QWX5 Cluster: Chromosome chr13
scaffold_210, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_210, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (19%)
Length = 508
Score = 315 bits (159), Expect = 2e-85
Identities = 166/167 (99%), Gaps = 1/167 (0%)
Strand = Plus / Minus
Query: 518 agacagttacaagtgatatgctcaaaaactttttctctgagaagggaaaagtgcttagtg 577
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 agacagttacaagtgatatgctcaaaa-ctttttctctgagaagggaaaagtgcttagtg 450
Query: 578 ccaaggtttcacgggttcctgggacctcaaagtccagtggctttggttttgttacttttt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccaaggtttcacgggttcctgggacctcaaagtccagtggctttggttttgttacttttt 390
Query: 638 catcagatgaggatgtagaagctgcaatctcatccttcaacaatgct 684
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catcagatgaggatgtagaagctgcaatctcatccttcaacaatgct 343