Miyakogusa Predicted Gene
- Lj3g3v0838360.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0838360.1 tr|Q9XGX6|Q9XGX6_GOSHI Cellulose synthase
catalytic subunit OS=Gossypium hirsutum GN=celA3 PE=2
SV=2,95.6,2.8026e-45,Cellulose_synt,Cellulose synthase; CELLULOSE
SYNTHASE-RELATED,NULL; X-BOX TRANSCRIPTION
FACTOR-RELAT,NODE_53922_length_331_cov_243.933533.path2.1
(273 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66434 similar to UniRef100_Q6DUJ2 Cluster: CesA2; n=1... 331 1e-90
gnl|LJGI|TC72916 homologue to UniRef100_Q6DUJ2 Cluster: CesA2; n... 260 4e-69
gnl|LJGI|TC76091 homologue to UniRef100_A7Q1M3 Cluster: Chromoso... 121 2e-27
gnl|LJGI|CN825218 homologue to UniRef100_Q6DUJ3 Cluster: CesA1; ... 119 9e-27
gnl|LJGI|AV423538 similar to UniRef100_Q7XB31 Cluster: Cellulose... 111 2e-24
gnl|LJGI|TC81605 similar to UniRef100_Q2IB41 Cluster: Cellulose ... 80 8e-15
gnl|LJGI|TC73929 homologue to UniRef100_Q6YBV2 Cluster: Cellulos... 66 1e-10
gnl|LJGI|TC58598 homologue to UniRef100_P93155 Cluster: Cellulos... 60 7e-09
>gnl|LJGI|TC66434 similar to UniRef100_Q6DUJ2 Cluster: CesA2; n=1; Acacia mangium|Rep:
CesA2 - Acacia mangium, partial (71%)
Length = 2954
Score = 331 bits (167), Expect = 1e-90
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 1 atgtcacaaatgagcctcgagaaacgatttggtcagtctgctgtttttgttgcctctaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 atgtcacaaatgagcctcgagaaacgatttggtcagtctgctgtttttgttgcctctaca 2516
Query: 61 ctaatggaaaatggtggtgttccccagtccgcgactccagaaacacttcttaaggaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2517 ctaatggaaaatggtggtgttccccagtccgcgactccagaaacacttcttaaagaagct 2576
Query: 121 attcatgttataagttgtggttatgaggataaaacagattggggaaatgag 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 attcatgttataagttgtggttatgaggataaaacagattggggaaatgag 2627
>gnl|LJGI|TC72916 homologue to UniRef100_Q6DUJ2 Cluster: CesA2; n=1; Acacia
mangium|Rep: CesA2 - Acacia mangium, partial (22%)
Length = 697
Score = 260 bits (131), Expect = 4e-69
Identities = 203/227 (89%)
Strand = Plus / Plus
Query: 1 atgtcacaaatgagcctcgagaaacgatttggtcagtctgctgtttttgttgcctctaca 60
||||||||||||||||| |||||| |||| ||||||||||||||||| || ||||||||
Sbjct: 467 atgtcacaaatgagccttgagaaaagattcggtcagtctgctgttttcgtagcctctacg 526
Query: 61 ctaatggaaaatggtggtgttccccagtccgcgactccagaaacacttcttaaggaagct 120
|| ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| |||
Sbjct: 527 ctgatggagaatggtggtgttcctcagtctgctactccagaaattcttcttaaggaggct 586
Query: 121 attcatgttataagttgtggttatgaggataaaacagattggggaaatgagataggatgg 180
||||||||||| || ||||| |||||||||||| |||| ||||||| ||||||||||||
Sbjct: 587 attcatgttatcagctgtggatatgaggataaatcagaatggggaacagagataggatgg 646
Query: 181 atctatggctctgtcacagaagatattcttactgggttcaagatgca 227
|| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 647 atttatggttctgtcacagaagatattcttactggattcaagatgca 693
>gnl|LJGI|TC76091 homologue to UniRef100_A7Q1M3 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 1339
Score = 121 bits (61), Expect = 2e-27
Identities = 103/117 (88%)
Strand = Plus / Plus
Query: 112 aaggaagctattcatgttataagttgtggttatgaggataaaacagattggggaaatgag 171
||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| |||
Sbjct: 26 aaggaagctattcatgttataagctgtggctatgaggagaaaactgaatggggaaaagag 85
Query: 172 ataggatggatctatggctctgtcacagaagatattcttactgggttcaagatgcac 228
|| |||||||| ||||| || ||||||||||||||| | ||||| || |||||||||
Sbjct: 86 attggatggatttatggttcggtcacagaagatattttgactggatttaagatgcac 142
>gnl|LJGI|CN825218 homologue to UniRef100_Q6DUJ3 Cluster: CesA1; n=1; Acacia
mangium|Rep: CesA1 - Acacia mangium, partial (15%)
Length = 518
Score = 119 bits (60), Expect = 9e-27
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 106 cttcttaaggaagctattcatgttataagttgtggttatgaggataaaacagattgggga 165
|||||||||||||| |||||||| || |||||||||||||| || || ||||| |||||
Sbjct: 267 cttcttaaggaagcaattcatgtcatcagttgtggttatgaagacaagacagaatggggc 326
Query: 166 aatgagataggatggatctatggctctgtcacagaagatattcttactgggttcaagatg 225
|| ||||| |||||||||||||| ||||| || |||||||| | |||||||| ||||||
Sbjct: 327 aaagagatcggatggatctatggttctgtgacggaagatatcttgactgggtttaagatg 386
Query: 226 cacgcccgtggttgga 241
|| || ||||||||||
Sbjct: 387 catgctcgtggttgga 402
>gnl|LJGI|AV423538 similar to UniRef100_Q7XB31 Cluster: Cellulose synthase 2; n=1;
Gossypioides kirkii|Rep: Cellulose synthase 2 -
Gossypioides kirkii, partial (24%)
Length = 414
Score = 111 bits (56), Expect = 2e-24
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 112 aaggaagctattcatgttataagttgtggttatgaggataaaacagattggggaaatgag 171
||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| |||
Sbjct: 312 aaggaagctattcatgttataagctgtggctatgaggagaaaactgaatggggaaaagag 371
Query: 172 ataggatggatctatggctctgtcacagaagatatt 207
|| |||||||| ||||| || |||||||||||||||
Sbjct: 372 attggatggatttatggttcggtcacagaagatatt 407
>gnl|LJGI|TC81605 similar to UniRef100_Q2IB41 Cluster: Cellulose synthase 3; n=1;
Eucalyptus grandis|Rep: Cellulose synthase 3 -
Eucalyptus grandis (Flooded gum), partial (39%)
Length = 1281
Score = 79.8 bits (40), Expect = 8e-15
Identities = 124/152 (81%)
Strand = Plus / Plus
Query: 109 cttaaggaagctattcatgttataagttgtggttatgaggataaaacagattggggaaat 168
||||| ||||| |||||||| || || ||||| ||||| |||||||| || |||||| |
Sbjct: 522 cttaaagaagccattcatgtaatcagctgtggatatgaagataaaactgaatggggactt 581
Query: 169 gagataggatggatctatggctctgtcacagaagatattcttactgggttcaagatgcac 228
||| | || ||||| ||||| ||| ||||||| |||||||| || || |||||||||||
Sbjct: 582 gaggttggctggatttatggatctatcacagaggatattctaacaggtttcaagatgcat 641
Query: 229 gcccgtggttggaggtctatatactgcatgcc 260
||| || |||||||| || |||||||||||
Sbjct: 642 tgccgggggtggaggtccatttactgcatgcc 673
>gnl|LJGI|TC73929 homologue to UniRef100_Q6YBV2 Cluster: Cellulose synthase; n=1;
Populus tremuloides|Rep: Cellulose synthase - Populus
tremuloides (Quaking aspen), partial (29%)
Length = 951
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 169 gagataggatggatctatggctctgtcacagaagatattcttactgggttcaagatgcac 228
||||| |||||||||||||| ||||| || |||||||| | |||||||| ||||||||
Sbjct: 3 gagatcggatggatctatggttctgtgacggaagatatcttgactgggtttaagatgcat 62
Query: 229 gcccgtggttgga 241
|| ||||||||||
Sbjct: 63 gctcgtggttgga 75
>gnl|LJGI|TC58598 homologue to UniRef100_P93155 Cluster: Cellulose synthase; n=3;
Gossypium|Rep: Cellulose synthase - Gossypium hirsutum
(Upland cotton) (Gossypium mexicanum), partial (34%)
Length = 1252
Score = 60.0 bits (30), Expect = 7e-09
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 112 aaggaagctattcatgttataagttgtggttatgaggataaaacagattggggaaatgag 171
||||| || |||||||| || |||||||| ||||| || || || | |||||||| |||
Sbjct: 2 aaggaggccattcatgtaattagttgtggatatgaagagaagactgcatggggaaaagag 61
Query: 172 ataggatggatctatggctctgtcacagaagatattcttactgggttcaagatgcacgcc 231
|| || ||||||||||| || || || || ||||| | || ||||||||||||||| |
Sbjct: 62 attggttggatctatggttcagtgactgaggatatcttaaccgggttcaagatgcactgc 121
Query: 232 cgtggttggaggtctatatactgcatgccc 261
| || |||||||| || ||||||||||||
Sbjct: 122 agaggatggaggtcaatttactgcatgccc 151