Miyakogusa Predicted Gene
- Lj3g3v0828270.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0828270.1 tr|G7KJU2|G7KJU2_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_6g092570 PE=4
SV=1,27.22,2e-17,DUF295,Protein of unknown function DUF295;
seg,NULL,CUFF.41574.1
(1269 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72516 458 e-128
gnl|LJGI|TC67753 similar to UniRef100_A7P8P1 Cluster: Chromosome... 168 5e-41
gnl|LJGI|TC72855 weakly similar to UniRef100_A7P8P1 Cluster: Chr... 103 3e-21
gnl|LJGI|BW602963 similar to UniRef100_A7P8P1 Cluster: Chromosom... 78 2e-13
gnl|LJGI|AV422434 similar to UniRef100_A7P8P1 Cluster: Chromosom... 78 2e-13
>gnl|LJGI|TC72516
Length = 660
Score = 458 bits (231), Expect = e-128
Identities = 234/235 (99%)
Strand = Plus / Plus
Query: 131 atccatccacggcggcgacaccagactggtctcaactcccggcggagctcctccgtctaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccatccacggcggcgacaccagactggtctcaactcccggcggagctcctccgtctaa 260
Query: 191 tctcagaacgcatcgacactccacttcacctcctccgcttccgatccgtctgttccatct 250
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagaacgcatcgacactccactccacctcctccgcttccgatccgtctgttccatct 320
Query: 251 ggcgctcttccgcaccccctgtcatccccctccaccattaccccttcgatttctcaacgc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgctcttccgcaccccctgtcatccccctccaccattaccccttcgatttctcaacgc 380
Query: 311 tccctgatcacgacgccttcaccttctccctaaccaaacgcaccgtcgtcctcat 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctgatcacgacgccttcaccttctccctaaccaaacgcaccgtcgtcctcat 435
Score = 373 bits (188), Expect = e-102
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 403 tggttggtcaaaatcggccaagacctatatggccggaaccgcctctggcacccactctat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tggttggtcaaaatcggccaagacctatatggccggaaccgcctctggcacccactctat 532
Query: 463 cggaacccacacttcgcaatccatgaaaagcgtgtgctcgatttgtacaacctctctgct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cggaacccacacttcgcaatccatgaaaagcgtgtgctcgatttgtacaacctctctgct 592
Query: 523 ttaccaatcgggaacgagttcgaccttcgccaatcccctcccaacggctccctctacatg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttaccaatcgggaacgagttcgaccttcgccaatcccctcccaacggctccctctacatg 652
Query: 583 gaaaaggt 590
||||||||
Sbjct: 653 gaaaaggt 660
Score = 204 bits (103), Expect = 1e-51
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 atggagtatttatctatcatattcctatatgttcagtcattcttcttctccttccttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atggagtatttatctatcatattcctatatgttcagtcattcttcttctccttccttgct 130
Query: 61 ctccctctcccggctttatttttcaacttcaaaagaaaaaaca 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctccctctcccggctttatttttcaacttcaaaagaaaaaaca 173
>gnl|LJGI|TC67753 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 697
Score = 168 bits (85), Expect = 5e-41
Identities = 206/247 (83%), Gaps = 12/247 (4%)
Strand = Plus / Plus
Query: 131 atccatccacggcggcgacaccagactggtctcaactcccggcggagctcctccgtctaa 190
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 106 atccatccatggcggcgccaccagactggtctcaactcccggcggagctcctccatctaa 165
Query: 191 tctcagaacgcatcgacactccacttcacctcctccgcttccgatccgtctgttccatct 250
||||| ||||| || ||| ||||| ||||||||||||| ||||||||||| |||| ||
Sbjct: 166 tctcacaacgcctcaacagcccactctacctcctccgctttcgatccgtctgctccacct 225
Query: 251 ggcg---ctcttccgcaccccctgtcatccccctccaccattaccccttcgatttctcaa 307
|||| |||||||||| || | |||||||| ||||||||| ||||||| ||||| ||
Sbjct: 226 ggcgccactcttccgcatcctccttcatccccatccaccatttccccttcaatttcccac 285
Query: 308 cgctccctgat---------cacgacgccttcaccttctccctaaccaaacgcaccgtcg 358
| ||| | ||| |||||||| | | |||||||||| ||||||||||||||||
Sbjct: 286 ccctctccgatcacgatcaccacgacgcttcctccttctccctcaccaaacgcaccgtcg 345
Query: 359 tcctcat 365
|||||||
Sbjct: 346 tcctcat 352
Score = 93.7 bits (47), Expect = 3e-18
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 32 ttcagtcattcttcttctccttccttgctctccctctcccggctttatttttcaacttca 91
|||||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct: 16 ttcagtcattcttcgtctccttccttgctctccttcttccggctttattcttctccttca 75
Query: 92 aaagaaaaaac 102
|||||||||||
Sbjct: 76 aaagaaaaaac 86
Score = 56.0 bits (28), Expect = 6e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 496 gtgctcgatttgtacaacctctctgctttaccaatcgggaacgagttcgaccttcgccaa 555
||||||||||| ||||||||||| | |||| ||||||||||||||| |||||| |||
Sbjct: 498 gtgctcgatttctacaacctctccgtcttacacatcgggaacgagttcaaccttcaccac 557
Query: 556 tcccctcc 563
|| |||||
Sbjct: 558 tctcctcc 565
Score = 54.0 bits (27), Expect = 2e-06
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 600 tcaggggaagcatggggtttccgtgttgctcacgattcacatatccggtaagctggcgct 659
|||||| ||||| | ||||| ||| ||||||||||||||||| ||||| ||||| || |
Sbjct: 623 tcagggtaagcaagaggttttcgtcttgctcacgattcacatctccggcaagctcgcctt 682
Query: 660 gtttcgcagcggcga 674
|| |||||||||||
Sbjct: 683 attccgcagcggcga 697
>gnl|LJGI|TC72855 weakly similar to UniRef100_A7P8P1 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 761
Score = 103 bits (52), Expect = 3e-21
Identities = 132/158 (83%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 149 caccagactggtctcaactcccggcggagctcctccgtctaatctcagaacgcat---cg 205
||||||||||||||||||| |||||||||||||||| |||||| | |||| || | ||
Sbjct: 133 caccagactggtctcaactgccggcggagctcctccatctaattttagaatgcctcgacg 192
Query: 206 acactccacttcacctcctccgcttccgatccgtctgttccatctggcgctcttccgcac 265
|||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct: 193 acaccccactcgaccgcctccgcttccgatccgtctgctccacatggcgctcttccattt 252
Query: 266 cccctgtcatccccctccaccattaccccttcgatttc 303
|||| |||||||| ||||||| | ||||||| |||||
Sbjct: 253 cccccttcatccccatccaccaattccccttcaatttc 290
Score = 83.8 bits (42), Expect = 2e-15
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 403 tggttggtcaaaatcggccaagacctatatggccggaaccgcctctggcacccactct 460
|||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct: 372 tggttggtcaaaatcggccaagacgaatgtggccggaaccgcctctggcaccctctct 429
>gnl|LJGI|BW602963 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 454
Score = 77.8 bits (39), Expect = 2e-13
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 153 agactggtctcaactcccggcggagctcctccgtctaatctcagaacgcatcgacactcc 212
||||||||||||||||||| |||||||||||| ||| || || ||||| |||| | ||
Sbjct: 101 agactggtctcaactcccgacggagctcctccatctgatttcccaacgcctcgatagccc 160
Query: 213 acttcacctcctccgcttccgatccgtctgttcca 247
|| |||||||||||||||| |||||||||||||
Sbjct: 161 gctctacctcctccgcttccgctccgtctgttcca 195
>gnl|LJGI|AV422434 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 422
Score = 77.8 bits (39), Expect = 2e-13
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 153 agactggtctcaactcccggcggagctcctccgtctaatctcagaacgcatcgacactcc 212
||||||||||||||||||| |||||||||||| ||| || || ||||| |||| | ||
Sbjct: 56 agactggtctcaactcccgacggagctcctccatctgatttcccaacgcctcgatagccc 115
Query: 213 acttcacctcctccgcttccgatccgtctgttcca 247
|| |||||||||||||||| |||||||||||||
Sbjct: 116 gctctacctcctccgcttccgctccgtctgttcca 150