Miyakogusa Predicted Gene
- Lj3g3v0828240.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0828240.1 tr|B9MX86|B9MX86_POPTR F-box family protein
OS=Populus trichocarpa GN=POPTRDRAFT_796629 PE=4
SV=1,28.08,2e-18,seg,NULL; no description,NULL,CUFF.41573.1
(1173 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67753 similar to UniRef100_A7P8P1 Cluster: Chromosome... 605 e-172
gnl|LJGI|TC72516 178 5e-44
gnl|LJGI|TC72855 weakly similar to UniRef100_A7P8P1 Cluster: Chr... 88 1e-16
gnl|LJGI|BW602963 similar to UniRef100_A7P8P1 Cluster: Chromosom... 64 2e-09
gnl|LJGI|AV422434 similar to UniRef100_A7P8P1 Cluster: Chromosom... 64 2e-09
>gnl|LJGI|TC67753 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 697
Score = 605 bits (305), Expect = e-172
Identities = 305/305 (100%)
Strand = Plus / Plus
Query: 397 tggttggtcaaaatcggcgaagacctatgtgacggtgaccgaacccgaacccgactctgg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tggttggtcaaaatcggcgaagacctatgtgacggtgaccgaacccgaacccgactctgg 452
Query: 457 caccctctctttcgtggtccacacttccccatctacgccatgcgcgtgctcgatttctac 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caccctctctttcgtggtccacacttccccatctacgccatgcgcgtgctcgatttctac 512
Query: 517 aacctctccgtcttacacatcgggaacgagttcaaccttcaccactctcctccttctccc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aacctctccgtcttacacatcgggaacgagttcaaccttcaccactctcctccttctccc 572
Query: 577 tccggccacgactctctctacatggagaaggtagttgcggctaccacctatcagggtaag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tccggccacgactctctctacatggagaaggtagttgcggctaccacctatcagggtaag 632
Query: 637 caagaggttttcgtcttgctcacgattcacatctccggcaagctcgccttattccgcagc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caagaggttttcgtcttgctcacgattcacatctccggcaagctcgccttattccgcagc 692
Query: 697 ggcga 701
|||||
Sbjct: 693 ggcga 697
Score = 573 bits (289), Expect = e-163
Identities = 332/352 (94%)
Strand = Plus / Plus
Query: 5 agtatgttgtacattttcagtcattcttcgtctccttccttgctctccttcttccggctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtatgttgtacattttcagtcattcttcgtctccttccttgctctccttcttccggctt 60
Query: 65 tattcttctccttcaaaagaaaaaaccaccaccaccacacaaccaatccatccatggcgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattcttctccttcaaaagaaaaaaccaccaccaccacacaaccaatccatccatggcgg 120
Query: 125 cgccaccagactggtctcaactcccggcggagctccgccatctaatctcacaacgcctca 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 cgccaccagactggtctcaactcccggcggagctcctccatctaatctcacaacgcctca 180
Query: 185 acagnnnnnnnnnnnnnnnnngcttccgatccgtctgttccacctggcgccactcttccg 244
|||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct: 181 acagcccactctacctcctccgctttcgatccgtctgctccacctggcgccactcttccg 240
Query: 245 catcctccttcatccccatccaccatttccccttcaatttcccacccctctccgatcacg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catcctccttcatccccatccaccatttccccttcaatttcccacccctctccgatcacg 300
Query: 305 atcaccacgacgcttcctccttctccctcaccaaacgcaccgtcgtcctcat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcaccacgacgcttcctccttctccctcaccaaacgcaccgtcgtcctcat 352
>gnl|LJGI|TC72516
Length = 660
Score = 178 bits (90), Expect = 5e-44
Identities = 149/170 (87%), Gaps = 9/170 (5%)
Strand = Plus / Plus
Query: 20 ttcagtcattcttcgtctccttccttgctctccttcttccggctttattcttctccttca 79
|||||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct: 102 ttcagtcattcttcttctccttccttgctctccctctcccggctttatttttcaacttca 161
Query: 80 aaagaaaaaac---------caccaccaccacacaaccaatccatccatggcggcgccac 130
||||||||||| ||||||||||||||| |||||||||||| ||||||| |||
Sbjct: 162 aaagaaaaaacaaccaccaccaccaccaccacacacccaatccatccacggcggcgacac 221
Query: 131 cagactggtctcaactcccggcggagctccgccatctaatctcacaacgc 180
|||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 222 cagactggtctcaactcccggcggagctcctccgtctaatctcagaacgc 271
Score = 56.0 bits (28), Expect = 5e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 502 gtgctcgatttctacaacctctccgtcttacacatcgggaacgagttcaaccttcaccac 561
||||||||||| ||||||||||| | |||| ||||||||||||||| |||||| |||
Sbjct: 566 gtgctcgatttgtacaacctctctgctttaccaatcgggaacgagttcgaccttcgccaa 625
Query: 562 tctcctcc 569
|| |||||
Sbjct: 626 tcccctcc 633
>gnl|LJGI|TC72855 weakly similar to UniRef100_A7P8P1 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 761
Score = 87.7 bits (44), Expect = 1e-16
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 206 gcttccgatccgtctgttccacctggcgccactcttccgcatcctccttcatccccatcc 265
|||||||||||||||| ||||| |||||| |||||| ||| |||||||||||||||
Sbjct: 214 gcttccgatccgtctgctccacatggcgc---tcttccatttcccccttcatccccatcc 270
Query: 266 accatttccccttcaatttcccaccc 291
|||| |||||||||||||||||||||
Sbjct: 271 accaattccccttcaatttcccaccc 296
Score = 77.8 bits (39), Expect = 1e-13
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 116 ccatggcggcgccaccagactggtctcaactcccggcggagctccgccatctaat 170
|||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 121 ccatggcggcagcaccagactggtctcaactgccggcggagctcctccatctaat 175
>gnl|LJGI|BW602963 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 454
Score = 63.9 bits (32), Expect = 2e-09
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 132 agactggtctcaactcccggcggagctccgccatctaatctcacaacgcctc 183
||||||||||||||||||| ||||||||| |||||| || || |||||||||
Sbjct: 101 agactggtctcaactcccgacggagctcctccatctgatttcccaacgcctc 152
Score = 56.0 bits (28), Expect = 5e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 206 gcttccgatccgtctgttccacctggcgccactcttccgcatcc 249
||||||| |||||||||||||| ||||||| ||||||| |||||
Sbjct: 175 gcttccgctccgtctgttccacatggcgccgctcttcctcatcc 218
>gnl|LJGI|AV422434 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 422
Score = 63.9 bits (32), Expect = 2e-09
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 132 agactggtctcaactcccggcggagctccgccatctaatctcacaacgcctc 183
||||||||||||||||||| ||||||||| |||||| || || |||||||||
Sbjct: 56 agactggtctcaactcccgacggagctcctccatctgatttcccaacgcctc 107
Score = 56.0 bits (28), Expect = 5e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 206 gcttccgatccgtctgttccacctggcgccactcttccgcatcc 249
||||||| |||||||||||||| ||||||| ||||||| |||||
Sbjct: 130 gcttccgctccgtctgttccacatggcgccgctcttcctcatcc 173