Miyakogusa Predicted Gene
- Lj3g3v0797420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0797420.1 tr|D4KKP8|D4KKP8_9FIRM DNA repair protein radA
OS=Roseburia intestinalis M50/1 GN=ROI_00960 PE=3 SV=,38.46,8,
,CUFF.41406.1
(276 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW600051 weakly similar to UniRef100_A7QY06 Cluster: Ch... 224 2e-58
gnl|LJGI|TC66040 homologue to UniRef100_A7QY06 Cluster: Chromoso... 196 5e-50
gnl|LJGI|TC63449 similar to UniRef100_A7QY06 Cluster: Chromosome... 117 4e-26
>gnl|LJGI|BW600051 weakly similar to UniRef100_A7QY06 Cluster: Chromosome undetermined
scaffold_235, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_235,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (10%)
Length = 469
Score = 224 bits (113), Expect = 2e-58
Identities = 224/257 (87%), Gaps = 3/257 (1%)
Strand = Plus / Plus
Query: 22 gttagattctgtgaaaaacggg-atcggaatgaatggat-ggaagtgaagaagatgaagg 79
|||||||||||||||| || | |||| ||||||||||| |||||||| ||| ||||| |
Sbjct: 151 gttagattctgtgaaacaccgatatcgcaatgaatggatcggaagtgatgaatatgaaag 210
Query: 80 agtggaacctgtttttcgatgagcttggtgaagaagcgttcggcgtcgagggcggagacg 139
| ||||||||||||||| |||| ||||||||| |||| ||||||||||| |||||||||
Sbjct: 211 attggaacctgtttttccatgaacttggtgaataagccttcggcgtcgaaggcggagact 270
Query: 140 tcgccgcggtagtcacgtcaaatgaggacgcgacctttgatgtcgaggaggaacatagca 199
||||||| ||| | |||||| |||| ||| | ||||||||||||||||| |||| || ||
Sbjct: 271 tcgccgctgtactaacgtcagatgatgactccacctttgatgtcgaggacgaacgtaaca 330
Query: 200 gaagttgcccctgcgaaaaacaatcctgtggatttcttgctttctggtgtgtgcgtgtgt 259
|||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 331 aaagttgcccctgcgaacaac-ctcctgtggatttcttgctttctggagtgtgcgtgtgt 389
Query: 260 tgaatttcgttggttga 276
|||||||| |||||||
Sbjct: 390 tgaatttccgtggttga 406
>gnl|LJGI|TC66040 homologue to UniRef100_A7QY06 Cluster: Chromosome undetermined
scaffold_235, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_235,
whole genome shotgun sequence - Vitis vinifera (Grape),
complete
Length = 1716
Score = 196 bits (99), Expect = 5e-50
Identities = 120/127 (94%)
Strand = Plus / Minus
Query: 87 cctgtttttcgatgagcttggtgaagaagcgttcggcgtcgagggcggagacgtcgccgc 146
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 162 cctgtttttcgatgagcttggtgaagaagcgttcggcgtcgagggcggtgacgtcgccgc 103
Query: 147 ggtagtcacgtcaaatgaggacgcgacctttgatgtcgaggaggaacatagcagaagttg 206
||||||| || || ||||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct: 102 ggtagtcgcgccagatgaggacgcggcctttgatgtcgaggaggaacagagcagaagctg 43
Query: 207 cccctgc 213
|||||||
Sbjct: 42 cccctgc 36
>gnl|LJGI|TC63449 similar to UniRef100_A7QY06 Cluster: Chromosome undetermined
scaffold_235, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_235,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (41%)
Length = 818
Score = 117 bits (59), Expect = 4e-26
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 91 tttttcgatgagcttggtgaagaagcgttcggcgtcgagggcggagacgtcgccgcggta 150
|||||| |||||||||||||||||||||||||| |||||||||| ||| ||||| |||||
Sbjct: 340 tttttctatgagcttggtgaagaagcgttcggcttcgagggcggtgacatcgccacggta 281
Query: 151 gtcacgtcaaatgaggacgcgacctttgatgtcgaggaggaacatagcaga 201
|| || |||||||| ||||| |||||||||||||| ||||| | ||||||
Sbjct: 280 atcgcgccaaatgagaacgcggcctttgatgtcgagtaggaagagagcaga 230