Miyakogusa Predicted Gene

Lj3g3v0683880.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0683880.1 tr|B9I020|B9I020_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568986 PE=4
SV=1,29.17,0.000008,seg,NULL,gene.g45848.t1.1
         (918 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW601553 similar to UniRef100_UPI000017F74C Cluster: va...   995   0.0  

>gnl|LJGI|BW601553 similar to UniRef100_UPI000017F74C Cluster: vacuolar protein
           sorting 37C; n=1; Rattus norvegicus|Rep: vacuolar
           protein sorting 37C - Rattus norvegicus, partial (7%)
          Length = 526

 Score =  995 bits (502), Expect = 0.0
 Identities = 520/526 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   cttcttctgatcatagccccttgatccctgaaaaaatgaaacgtttatgtttcggtgagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cttcttctgatcatagccccttgatccctgaaaaaatgaaacgtttatgtttcggtgagg 60

                                                                       
Query: 65  aacaacccagaaacactgaaccttcagctgctgcagctggaaagagagggagaaagcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacaacccagaaacactgaaccttcagctgctgcagctggaaagagagggagaaagcctg 120

                                                                       
Query: 125 gtacttccagaactcccaagaacaaggttccacagagaggcatgggtgtggaacggttgg 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcacttccagaactcccaagaacaaggttccacagagaggcatgggtgtggaacggttgg 180

                                                                       
Query: 185 agcaaatgagggttcaagagtccttgcagcaggcagctgcagctggattggtggtgctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcaaatgagggttcaagagtccttgcagcaggcagctgcagctggattggtggtgctgc 240

                                                                       
Query: 245 cgccgtctcagccgcagacgccgccaacgctcgtccaccaccaccaccatcacaactctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgccgtctcagccgcagacgccgccaacgctcgtccaccaccaccaccatcacaactctc 300

                                                                       
Query: 305 aattgggttatggtgcaccctcaccaccaccccatgttgcctatggtgcctatggtttgg 364
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 cattgggttatggtgcaccctcaccaccaccccatgttgcctatggcgcctatggtttgg 360

                                                                       
Query: 365 atcactaccccaaaccaatgatccatgctggccacagcagcatcagcacttttggggtgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 361 atcactaccccaaaccaatgatccatgctggccacagcagcatcagcacctttggggtgg 420

                                                                       
Query: 425 tgagtcatcatcatcagggtcctaatttcactactgagggtgttgctgtggctggaactt 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 421 tgagtcatcatcatcagggtcctaatttcactactgagggtgttgctgtggctgcacctt 480

                                                         
Query: 485 ctcctgggtggtctgtgcctaatcatcatcagcatcagctcaacag 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcctgggtggtctgtgcctaatcatcatcagcatcagctcaacag 526