Miyakogusa Predicted Gene

Lj3g3v0615880.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0615880.1 CUFF.41035.1
         (420 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59621 homologue to UniRef100_A7PZS6 Cluster: Chromoso...    88   5e-17
gnl|LJGI|BP062301 homologue to UniRef100_A7PZS6 Cluster: Chromos...    56   2e-07
gnl|LJGI|TC75218 homologue to UniRef100_A7PZS6 Cluster: Chromoso...    56   2e-07

>gnl|LJGI|TC59621 homologue to UniRef100_A7PZS6 Cluster: Chromosome chr15
           scaffold_40, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_40, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (54%)
          Length = 759

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 81/92 (88%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 231 atatggagaactgaaggtttccatgggatgttcaaagggaacaacactaattgtactcaa 290
           |||||||||||||||||||||| |||  ||||||||||||||   ||||||||| ||| |
Sbjct: 442 atatggagaactgaaggtttccgtggactgttcaaagggaacggaactaattgtgctcga 501

                                           
Query: 291 attgtctataattctgctgttgaagttcttca 322
           ||||||  ||||||||||| ||||||||||||
Sbjct: 502 attgtccctaattctgctg-tgaagttcttca 532


>gnl|LJGI|BP062301 homologue to UniRef100_A7PZS6 Cluster: Chromosome chr15
           scaffold_40, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_40, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (24%)
          Length = 364

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 77/92 (83%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 231 atatggagaactgaaggtttccatgggatgttcaaagggaacaacactaattgtactcaa 290
           |||||||| ||||||||||||| |||| |||||||||| ||    ||||||||| ||| |
Sbjct: 208 atatggaggactgaaggtttccgtgggctgttcaaaggaaatggtactaattgtgctcga 267

                                           
Query: 291 attgtctataattctgctgttgaagttcttca 322
           || |||  ||||||||| | ||||||||||||
Sbjct: 268 atcgtccctaattctgcag-tgaagttcttca 298


>gnl|LJGI|TC75218 homologue to UniRef100_A7PZS6 Cluster: Chromosome chr15
           scaffold_40, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_40, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (95%)
          Length = 1767

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 77/92 (83%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 231 atatggagaactgaaggtttccatgggatgttcaaagggaacaacactaattgtactcaa 290
           |||||||| ||||||||||||| |||| |||||||||| ||    ||||||||| ||| |
Sbjct: 558 atatggaggactgaaggtttccgtgggctgttcaaaggaaatggtactaattgtgctcga 617

                                           
Query: 291 attgtctataattctgctgttgaagttcttca 322
           || |||  ||||||||| | ||||||||||||
Sbjct: 618 atcgtccctaattctgcag-tgaagttcttca 648