Miyakogusa Predicted Gene
- Lj3g3v0478170.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0478170.1 Non Chatacterized Hit- tr|H2YXV1|H2YXV1_CIOSA
Uncharacterized protein OS=Ciona savignyi GN=Csa.9450
,39.29,2e-16,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition motif
domain; PWI,Splicing factor PWI; no descri,CUFF.41007.1
(2073 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61524 similar to UniRef100_A7QWV2 Cluster: Chromosome... 1118 0.0
gnl|LJGI|FS324338 similar to UniRef100_A7QWV2 Cluster: Chromosom... 1037 0.0
gnl|LJGI|TC65954 similar to UniRef100_A7QWV2 Cluster: Chromosome... 230 3e-59
gnl|LJGI|TC65354 similar to UniRef100_A7QWV2 Cluster: Chromosome... 62 1e-08
>gnl|LJGI|TC61524 similar to UniRef100_A7QWV2 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 830
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 1506 aagtgcggctggtcatttgttagaggatgctgattcacgaactatttttgccagcaatgt 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtgcggctggtcatttgttagaggatgctgattcacgaactatttttgccagcaatgt 60
Query: 1566 tcattttgctgcaaccaaagatggcctatcgcgtcattttaataaatttggggaagtgct 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcattttgctgcaaccaaagatggcctatcgcgtcattttaataaatttggggaagtgct 120
Query: 1626 aaaagttgttatagttactgatgcaatgacaggacaaccaaaaggggcagcttatgtgga 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaagttgttatagttactgatgcaatgacaggacaaccaaaaggggcagcttatgtgga 180
Query: 1686 gttcatgagtaaagaagctgcagataatgcattatcactggatggaacttccttcatgtc 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttcatgagtaaagaagctgcagataatgcattatcactggatggaacttccttcatgtc 240
Query: 1746 acgtattctcaaggttgtgaggaaaagtgctgcacctcaagagtatgctccagccctgcc 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acgtattctcaaggttgtgaggaaaagtgctgcacctcaagagtatgctccagccctgcc 300
Query: 1806 atggccacgtggagttaggggatcaccatttccctctgctaggttttcaagagctccctt 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggccacgtggagttaggggatcaccatttccctctgctaggttttcaagagctccctt 360
Query: 1866 cccgagaggtgttgtcggggcatttagccctaggcccccagttaaatttggttccaggag 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cccgagaggtgttgtcggggcatttagccctaggcccccagttaaatttggttccaggag 420
Query: 1926 cttgcaatggaagcgggatgctcagggtatttcatcagaaagtagtgcagcttcaaatta 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttgcaatggaagcgggatgctcagggtatttcatcagaaagtagtgcagcttcaaatta 480
Query: 1986 cagcaatctttcttcacctggtgctcgaggtctcacctatgtgagaacagaatctaagct 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 cagcaatctttcttcacctggtgctcgaggtctcacctatgtgagaacagaatttaagct 540
Query: 2046 ggatgccagcttgaattccacgtaattt 2073
||||||||||||||||||||||||||||
Sbjct: 541 ggatgccagcttgaattccacgtaattt 568
>gnl|LJGI|FS324338 similar to UniRef100_A7QWV2 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 743
Score = 1037 bits (523), Expect = 0.0
Identities = 537/544 (98%)
Strand = Plus / Plus
Query: 1 atggggagcatcgatcgttccgatcgccggaagttcaggaccgatttcacggcggaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atggggagcatcgatcgttccgatcgccggaagttcaggaccgatttcacggcggaagga 259
Query: 61 gtggcggtgctgagggaaaaagtgaatgagaagctgaaggagttcatgggggattacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtggcggtgctgagggaaaaagtgaatgagaagctgaaggagttcatgggggattacact 319
Query: 121 gatgacactcttgtggaatatgttattgtgttactgaggaatggcagggacaaagatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatgacactcttgtggaatatgttattgtgttactgaggaatggcagggacaaagatcaa 379
Query: 181 gcgaagaatgagttaaatgnnnnnnngggggatgacagtgattcttttgtagcctggttg 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 gcgaagaatgagttaaatgtttttttgggggatgacagtgattcttttgtagcctggttg 439
Query: 241 tgggatcatttggctttgaatatagatttgtatgtacaatctaaagagttgcaggatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgggatcatttggctttgaatatagatttgtatgtacaatctaaagagttgcaggatgaa 499
Query: 301 gctcccaaaagaaagcttatatcagaggtccaagctggaggtgatggttttcagcatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctcccaaaagaaagcttatatcagaggtccaagctggaggtgatggttttcagcatttg 559
Query: 361 aattcacagtcagaaagagtagagtctaataagttatctagaagtcgccgtaacaaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aattcacagtcagaaagagtagagtctaataagttatctagaagtcgccgtaacaaagat 619
Query: 421 tggaaaggattggtggggagagatactgaagcaccatacctttggaactctgaggttgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggaaaggattggtggggagagatactgaagcaccatacctttggaactctgaggttgac 679
Query: 481 aatgttcatttggaggaaaaagaccgatctaaagtcaatcgtggtccaaggttacaatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgttcatttggaggaaaaagaccgatctaaagtcaatcgtggtccaaggttacaatct 739
Query: 541 cctc 544
||||
Sbjct: 740 cctc 743
>gnl|LJGI|TC65954 similar to UniRef100_A7QWV2 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 774
Score = 230 bits (116), Expect = 3e-59
Identities = 288/348 (82%), Gaps = 6/348 (1%)
Strand = Plus / Plus
Query: 88 gagaagctgaaggagttcatgggggattacactgatgacactcttgtggaatatgttatt 147
|||||||| ||||| ||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct: 198 gagaagctcaaggaattcatgggggattacaccgatgacattctagtggaatatgttatt 257
Query: 148 gtgttactgaggaatggcagggacaaagatcaagcgaagaatgagttaaatgnnnnnnng 207
|||||| |||||||||| | | |||||| ||||| | ||||||||| |||| |
Sbjct: 258 gtgttattgaggaatggtaagcgcaaagaccaagctaggaatgagttgaatgtttttttg 317
Query: 208 ggggatgacagtgattcttttgtagcctggttgtgggatcatttggctttgaatatagat 267
|||||||||||||| |||| | ||||| ||||||||||||||| ||||||| ||| |
Sbjct: 318 ggggatgacagtgactcttccccatcctggctgtgggatcatttggatttgaatttaggt 377
Query: 268 ttgtatgtacaatctaaagagttgcaggatgaagctcccaaaagaaagcttatatcagag 327
|| |||||| || || |||| ||||||| ||||| ||| ||| ||||||||||
Sbjct: 378 ttatatgtaaaacctgaagaattgcaggttgaagatcc------taaggttatatcagaa 431
Query: 328 gtccaagctggaggtgatggttttcagcatttgaattcacagtcagaaagagtagagtct 387
||||||||||| || |||| ||||||||||| ||||||||||||||||||| | | |||
Sbjct: 432 gtccaagctgggggggatgtttttcagcattcaaattcacagtcagaaagaggaaaatct 491
Query: 388 aataagttatctagaagtcgccgtaacaaagattggaaaggattggtg 435
||||||||| |||||||||| ||||| | ||||||||||||| |||||
Sbjct: 492 aataagttacctagaagtcggcgtaatagagattggaaaggactggtg 539
Score = 89.7 bits (45), Expect = 7e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 627 tgctcctcgacggctgcttcagtttgcagtacgagatgcagtggctacttcaa 679
||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 722 tgctcctcgacggctgcttcaatttgcagttcgagatgcagtggctacttcaa 774
>gnl|LJGI|TC65354 similar to UniRef100_A7QWV2 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 807
Score = 61.9 bits (31), Expect = 1e-08
Identities = 109/135 (80%)
Strand = Plus / Plus
Query: 1820 ttaggggatcaccatttccctctgctaggttttcaagagctcccttcccgagaggtgttg 1879
|||||||||| |||||| | ||||||||||||| ||| |||||| || |||||| ||
Sbjct: 30 ttaggggatctccattttctactgctaggttttcccgagttccctttccaagaggtattc 89
Query: 1880 tcggggcatttagccctaggcccccagttaaatttggttccaggagcttgcaatggaagc 1939
|| || ||||| ||| |||| ||| | ||| | ||| | ||||| ||||||||||||
Sbjct: 90 ctggtgcttttagacctcggcctccattaaaagtgggtgctaggagtatgcaatggaagc 149
Query: 1940 gggatgctcagggta 1954
|||||||||||||||
Sbjct: 150 gggatgctcagggta 164