Miyakogusa Predicted Gene
- Lj3g3v0478140.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0478140.1 Non Chatacterized Hit- tr|J3MFT7|J3MFT7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,36.41,8e-16,SAE2,DNA repair protein Sae2/CtIP; seg,NULL;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; RETINOBLAST,CUFF.40885.1
(1821 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|CB828003 similar to UniRef100_A7QWV6 Cluster: Chromosom... 829 0.0
gnl|LJGI|TC77304 similar to UniRef100_A7QWV6 Cluster: Chromosome... 811 0.0
gnl|LJGI|TC78975 similar to UniRef100_A7QWV6 Cluster: Chromosome... 581 e-165
>gnl|LJGI|CB828003 similar to UniRef100_A7QWV6 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 442
Score = 829 bits (418), Expect = 0.0
Identities = 418/418 (100%)
Strand = Plus / Plus
Query: 1 atggccgaacaagacgtagcagcaccgggagaatctcaccggaaccctcccaaattaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 atggccgaacaagacgtagcagcaccgggagaatctcaccggaaccctcccaaattaggg 84
Query: 61 ttcccactaccacccgccgccgccggcgacgagaaactcatctccggcctcagcaccatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ttcccactaccacccgccgccgccggcgacgagaaactcatctccggcctcagcaccatc 144
Query: 121 ctcgtcgcatcgatccaagaagccagagacaggatctcacagatcgagtacgttttctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctcgtcgcatcgatccaagaagccagagacaggatctcacagatcgagtacgttttctgc 204
Query: 181 tcccagatctacccgcacttccaatccacttcaaagcactccgactccaaacgccgtcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tcccagatctacccgcacttccaatccacttcaaagcactccgactccaaacgccgtcgc 264
Query: 241 atcgaggagctcgagcgcgaggtcgacgaaggcatggcgctgcacaagacgctgacggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcgaggagctcgagcgcgaggtcgacgaaggcatggcgctgcacaagacgctgacggag 324
Query: 301 ctggttcgatccaaggagttgtcactgagagccagcgaggagaagcggaaatccgcggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggttcgatccaaggagttgtcactgagagccagcgaggagaagcggaaatccgcggtc 384
Query: 361 gcgaaactggaacgttgcgagagtgaaacggcgtcgcttttggggagaattgatgagt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcgaaactggaacgttgcgagagtgaaacggcgtcgcttttggggagaattgatgagt 442
>gnl|LJGI|TC77304 similar to UniRef100_A7QWV6 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 428
Score = 811 bits (409), Expect = 0.0
Identities = 424/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 877 gccaatttgattcctccgtcttccagtttctatgttcgcccaaaatgtccatccagtgat 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaatttgattcctccgtcttccagtttctatgttcgcccaaaatgtccatccagtgat 60
Query: 937 catccgcttgctattagtgcaggccttgagaacacaactcctgatgtgtttgtttccgtg 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catccgcttgctattagtgcaggccttgagaacacaactcctgatgtgtttgtttccgtg 120
Query: 997 cgtgatgcaaatgaagtga-aggagaaaacattggaggatgacagaggaggcaaattgat 1055
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 cgtgatgcaaatgaagtgagaggagaaaacattggaggatgacaaaggaggcaaattgat 180
Query: 1056 tcctccatcttcgagtttctatgttcgaccaaaatgtccatccagtgcaaaggtagcttc 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcctccatcttcgagtttctatgttcgaccaaaatgtccatccagtgcaaaggtagcttc 240
Query: 1116 tgtatctggtactaagcggcctgcaccttcctggaggctaacccggtcccatcaaagtcg 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtatctggtactaagcggcctgcaccttcctggaggctaacccggtcccatcaaagtcg 300
Query: 1176 agcaggccctgaccctcatgatgattttcttgatactcctcttgagaatatcagagtaaa 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcaggccctgaccctcatgatgattttcttgatactcctcttgagaatatcagagtaaa 360
Query: 1236 tttaaataaggatttgaacaaggcagatctcccatgcccaattcagaaagacattagcat 1295
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 tttaaataaggatttgaacaaggcagatctcccatgccncattcagaaagacattagcat 420
Query: 1296 gaacagct 1303
||||||||
Sbjct: 421 gaacagct 428
Score = 204 bits (103), Expect = 1e-51
Identities = 137/147 (93%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 789 aggccttgagaacgcaactcctgatgtgtttgtttccgtgcgtaatgcaaatgaagtga- 847
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 81 aggccttgagaacacaactcctgatgtgtttgtttccgtgcgtgatgcaaatgaagtgag 140
Query: 848 aggagaaaacattgggggatgacagaggagccaatttgattcctccgtcttccagtttct 907
||||||||||||||| |||||||| ||||| ||| ||||||||||| ||||| |||||||
Sbjct: 141 aggagaaaacattggaggatgacaaaggaggcaaattgattcctccatcttcgagtttct 200
Query: 908 atgttcgcccaaaatgtccatccagtg 934
||||||| |||||||||||||||||||
Sbjct: 201 atgttcgaccaaaatgtccatccagtg 227
>gnl|LJGI|TC78975 similar to UniRef100_A7QWV6 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 978
Score = 581 bits (293), Expect = e-165
Identities = 302/305 (99%)
Strand = Plus / Plus
Query: 703 ggtcttgcatttgaagaccctgacattactatgggtgcttgtaaagcaacagacatggag 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtcttgcatttgaagaccctgacattactatgggtgcttgtaaagcaacagacatggag 247
Query: 763 agtgaaatcccagaggatgactttggaggccttgagaacgcaactcctgatgtgtttgtt 822
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agtgaaatcccagaggaagactttggaggccttgagaacgcaactcctgatgtgtttgtt 307
Query: 823 tccgtgcgtaatgcaaatgaagtgaaggagaaaacattgggggatgacagaggagccaat 882
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccgtgcgtgatgcaaatgaagtgaaggagaaaacattgggggatgacagaggagccaat 367
Query: 883 ttgattcctccgtcttccagtttctatgttcgcccaaaatgtccatccagtgatcatccg 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgattcctccgtcttccagtttctatgttcgcccaaaatgtccatccagtgatcatccg 427
Query: 943 cttgctattagtgcaggccttgagaacacaactcctgatgtgtttgtttccgtgcgtgat 1002
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttgctattagtgcaggcctcgagaacacaactcctgatgtgtttgtttccgtgcgtgat 487
Query: 1003 gcaaa 1007
|||||
Sbjct: 488 gcaaa 492
Score = 357 bits (180), Expect = 2e-97
Identities = 183/184 (99%)
Strand = Plus / Plus
Query: 1638 atgcaaacaatgccgaaagttctatgatgctgttcttcctaatgctgatggtaaggaccc 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atgcaaacaatgccgaaagttctatgatgctgttcttcctaatgctgatggtaaggaccc 545
Query: 1698 tgataacagtaagcagaatttccgctgtgaacatcttgatggtgtttctaggcatcggta 1757
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 546 tgataacagtaagcagaatttccgctgtgaacatcttgatggtgtttttaggcatcggta 605
Query: 1758 caggtatgttcctcccatgactcctgaaggattttggaacattggatttgaatctgaaat 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caggtatgttcctcccatgactcctgaaggattttggaacattggatttgaatctgaaat 665
Query: 1818 gtaa 1821
||||
Sbjct: 666 gtaa 669
Score = 234 bits (118), Expect = 2e-60
Identities = 139/146 (95%)
Strand = Plus / Plus
Query: 957 aggccttgagaacacaactcctgatgtgtttgtttccgtgcgtgatgcaaatgaagtgaa 1016
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aggccttgagaacgcaactcctgatgtgtttgtttccgtgcgtgatgcaaatgaagtgaa 333
Query: 1017 ggagaaaacattggaggatgacagaggaggcaaattgattcctccatcttcgagtttcta 1076
|||||||||||||| |||||||||||||| ||| ||||||||||| ||||| ||||||||
Sbjct: 334 ggagaaaacattgggggatgacagaggagccaatttgattcctccgtcttccagtttcta 393
Query: 1077 tgttcgaccaaaatgtccatccagtg 1102
|||||| |||||||||||||||||||
Sbjct: 394 tgttcgcccaaaatgtccatccagtg 419