Miyakogusa Predicted Gene
- Lj3g3v0478110.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0478110.2 Non Chatacterized Hit- tr|I1MJM3|I1MJM3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3736
PE=,77.95,0,seg,NULL; Surp module (SWAP domain),SWAP/Surp;
Suppressor-of-White-APricot splicing regulat,SWAP/Sur,CUFF.40906.2
(1302 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58661 similar to UniRef100_A7QWV9 Cluster: Chromosome... 1437 0.0
gnl|LJGI|AW720262 similar to UniRef100_A7QWV9 Cluster: Chromosom... 741 0.0
gnl|LJGI|TC63426 similar to UniRef100_Q94C11 Cluster: Splicing f... 450 e-125
gnl|LJGI|TC75053 homologue to UniRef100_Q6ENK8 Cluster: Splicing... 278 8e-74
gnl|LJGI|AV417754 similar to UniRef100_A7QWV9 Cluster: Chromosom... 105 7e-22
gnl|LJGI|AV407318 similar to UniRef100_A7QWV9 Cluster: Chromosom... 96 7e-19
>gnl|LJGI|TC58661 similar to UniRef100_A7QWV9 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (51%)
Length = 796
Score = 1437 bits (725), Expect = 0.0
Identities = 739/746 (99%)
Strand = Plus / Plus
Query: 385 gcacctccttcacctagtgatcctactgtgaagaaagttgctgacaaactagcaagtttt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gcacctccttcacctagtgatcctactgtgaagaaagttgctgacaaactagcaagtttt 110
Query: 445 gtggcaaaaaacggaaggcaatttgaggatgttacacgccnnnnnnntcctggcgataca 504
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 111 gtggcaaaaaacggaaggcaatttgaggatgttacacgccaaaaaaatcctggcgataca 170
Query: 505 cctttcaagtttttatttgatgaacgatgtgctgactacaaatattatgaatataggctc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cctttcaagtttttatttgatgaacgatgtgctgactacaaatattatgaatataggctc 230
Query: 565 ggacaagaggaaaagacccttttgcagtatagggaaccacaggcaattcattatgttccg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggacaagaggaaaagacccttttgcagtatagggaaccacaggcaattcattatgttccg 290
Query: 625 ccactgggtacaagcatatcgtcttccagaccagcaaatggtcctcagaggtcttctgag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ccactgggtacaagcatatcgtcttccagaccagcaaatggtcctcagaggtcttctgag 350
Query: 685 cagcggccaacttaccaaatccctgcttctgctttatatgaaagtggtgatgtaccaaga 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cagcggccaacttaccaaatccctgcttctgctttatatgaaagtggtgatgtaccaaga 410
Query: 745 acttcgggatcttcagtgcaagcattatcagttgtaagctctgctgagcccagtggatca 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acttcgggatcttcagtgcaagcattatcagttgtaagctctgctgagcccagtggatca 470
Query: 805 tcaaatgctgattctttagcactaatggagttctacatgaagaaagctgcacgggaagaa 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcaaatgctgattctttagcactaatggagttctacatgaagaaagctgcacgggaagaa 530
Query: 865 aggtcaaaacaacctaagcagtcaaaagatgagatgccccctcctgcttctcttcaaggg 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aggtcaaaacaacctaagcagtcaaaagatgagatgccccctcctgcttctcttcaaggg 590
Query: 925 aagaaaggccatcatatgggtgattatattccccttgaagaacttgagaagttcatggct 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aagaaaggccatcatatgggtgattatattccccttgaagaacttgagaagttcatggct 650
Query: 985 agctgtaatgatgctggagcacagaaagttttgaaggagactgcagagaaggccaaaatc 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agctgtaatgatgctggagcacagaaagttttgaaggagactgcagagaaggccaaaatc 710
Query: 1045 caggcggataatgtgggccacaagcttctatcaaaaatgggttggaaagaaggtgagggt 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 caggcggataatgtgggccacaagcttctatcaaaaatgggttggaaagaaggtgagggt 770
Query: 1105 ttaggcggctccaggaagggtatttc 1130
||||||||||||||||||||||||||
Sbjct: 771 ttaggcggctccaggaagggtatttc 796
>gnl|LJGI|AW720262 similar to UniRef100_A7QWV9 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 579
Score = 741 bits (374), Expect = 0.0
Identities = 374/374 (100%)
Strand = Plus / Plus
Query: 1 atggataagggaccacctcatagcctttttgttaatgatggttcgttcatggcgaggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 atggataagggaccacctcatagcctttttgttaatgatggttcgttcatggcgaggttc 265
Query: 61 aagcagcttcaacaagagcaggggaaggggaagaataccaaattagaggattctaaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagcagcttcaacaagagcaggggaaggggaagaataccaaattagaggattctaaacca 325
Query: 121 attaaagttgtttctagaccgctgactcctaatccttccattggtaaggctactgatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attaaagttgtttctagaccgctgactcctaatccttccattggtaaggctactgatgca 385
Query: 181 cgaaaaacttcccaggctggttctagtggcaaacttgctttcagtttaaagcaaaaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgaaaaacttcccaggctggttctagtggcaaacttgctttcagtttaaagcaaaaatca 445
Query: 241 aagctagttccaccccctattaagttgactgatgaggatgaagaagaaactaatgccggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagctagttccaccccctattaagttgactgatgaggatgaagaagaaactaatgccggg 505
Query: 301 gatgtttcaaatgacgcaccgtcgaaacggcaaaagttgggtcaggatgatgatgctgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gatgtttcaaatgacgcaccgtcgaaacggcaaaagttgggtcaggatgatgatgctgag 565
Query: 361 caatcatcaagacc 374
||||||||||||||
Sbjct: 566 caatcatcaagacc 579
>gnl|LJGI|TC63426 similar to UniRef100_Q94C11 Cluster: Splicing factor 4-like protein;
n=1; Arabidopsis thaliana|Rep: Splicing factor 4-like
protein - Arabidopsis thaliana (Mouse-ear cress), partial
(7%)
Length = 1245
Score = 450 bits (227), Expect = e-125
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 1 atggataagggaccacctcatagcctttttgttaatgatggttcgttcatggcgaggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 atggataagggaccacctcatagcctttttgttaatgatggttcgttcatggcgaggttc 1078
Query: 61 aagcagcttcaacaagagcaggggaaggggaagaataccaaattagaggattctaaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 aagcagcttcaacaagagcaggggaaggggaagaataccaaattagaggattctaaacca 1138
Query: 121 attaaagttgtttctagaccgctgactcctaatccttccattggtaaggctactgatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 attaaagttgtttctagaccgctgactcctaatccttccattggtaaggctactgatgca 1198
Query: 181 cgaaaaacttcccaggctggttctagtggcaaacttgctttcagttt 227
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 cgaaaaacttcccaggctggttctagtggcaaacttgctttcagttt 1245
>gnl|LJGI|TC75053 homologue to UniRef100_Q6ENK8 Cluster: Splicing factor 4-like
protein; n=2; Oryza sativa Japonica Group|Rep: Splicing
factor 4-like protein - Oryza sativa subsp. japonica
(Rice), partial (17%)
Length = 502
Score = 278 bits (140), Expect = 8e-74
Identities = 146/148 (98%)
Strand = Plus / Plus
Query: 1155 taagaaagatcacttgggagtaggtgctgtccaacctggggaggtgacttctgaagatga 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taagaaagatcacttgggagtaggtgctgtccaacctggggaggtgacttctgaagatga 60
Query: 1215 catatatgagcagtacaaaaagcgcatgatgcttggctaccgtcacagacccaatcctct 1274
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catatatgaccagtaccaaaagcgcatgatgcttggctaccgtcacagacccaatcctct 120
Query: 1275 gaacaatcctcgcaaggcgtattactga 1302
||||||||||||||||||||||||||||
Sbjct: 121 gaacaatcctcgcaaggcgtattactga 148
>gnl|LJGI|AV417754 similar to UniRef100_A7QWV9 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 156
Score = 105 bits (53), Expect = 7e-22
Identities = 100/118 (84%)
Strand = Plus / Plus
Query: 441 ttttgtggcaaaaaacggaaggcaatttgaggatgttacacgccnnnnnnntcctggcga 500
||||||||| | ||| ||||||| |||||||||||| ||||| |||||| ||
Sbjct: 1 ttttgtggctagaaatggaaggcgatttgaggatgtcacacgttcaaaaaatcctgggga 60
Query: 501 tacacctttcaagtttttatttgatgaacgatgtgctgactacaaatattatgaatat 558
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 61 tacacctttcaagtttttatttgatgagagatgtgctgactacaagtattatgaatat 118
>gnl|LJGI|AV407318 similar to UniRef100_A7QWV9 Cluster: Chromosome chr13 scaffold_210,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_210, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 428
Score = 95.6 bits (48), Expect = 7e-19
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 34 aatgatggttcgttcatggcgaggttcaagcagcttcaacaagagcaggggaaggggaag 93
||||||||||| || |||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 122 aatgatggttcatttatggaaaggttcaagcaacttcaacaagagcagggaaaggggaag 181
Query: 94 aataccaaattagaggattctaaaccaattaaagtt 129
||| ||| | |||||||||||||||||||||||
Sbjct: 182 aatgtcaacatcaaggattctaaaccaattaaagtt 217
Score = 85.7 bits (43), Expect = 6e-16
Identities = 123/149 (82%), Gaps = 3/149 (2%)
Strand = Plus / Plus
Query: 174 tgatgcacgaaaaacttcccaggctggttctagtggcaaacttgctttcagtttaaagca 233
|||||||| ||||| |||| |||||||| |||||||| || |||||||||||||| ||
Sbjct: 280 tgatgcacataaaacaccccaagctggttccagtggcaagctagctttcagtttaaaaca 339
Query: 234 aaaatcaaagctagttccaccccctattaagttga---ctgatgaggatgaagaagaaac 290
||| || ||||| || ||||| ||| ||||||| | ||||||||||||||||||||||
Sbjct: 340 aaagtctaagctggtgccaccacctgttaagttaagtgctgatgaggatgaagaagaaac 399
Query: 291 taatgccggggatgtttcaaatgacgcac 319
||| | ||||||| ||||||| ||||
Sbjct: 400 agatgttgcggatgttccaaatgatgcac 428