Miyakogusa Predicted Gene

Lj3g3v0478020.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0478020.1 Non Chatacterized Hit- tr|A5AEX9|A5AEX9_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,70,0,seg,NULL;
Osmotin, thaumatin-like protein,Thaumatin, pathogenesis-related;
Thaumatin,Thaumatin, path,CUFF.40877.1
         (717 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV769280 homologue to UniRef100_Q6V8P2 Cluster: Thaumat...    64   1e-09
gnl|LJGI|TC69878 similar to UniRef100_A7QDW9 Cluster: Chromosome...    64   1e-09

>gnl|LJGI|AV769280 homologue to UniRef100_Q6V8P2 Cluster: Thaumatin-like
           pathogenesis-related protein; n=1; Malus x
           domestica|Rep: Thaumatin-like pathogenesis-related
           protein - Malus domestica (Apple) (Malus sylvestris),
           partial (48%)
          Length = 327

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 638 cttatagctatgcctatgatgatgcaaccagcactttcac 677
           |||||||||| |||||||||||||| ||||||||||||||
Sbjct: 315 cttatagctacgcctatgatgatgccaccagcactttcac 276


>gnl|LJGI|TC69878 similar to UniRef100_A7QDW9 Cluster: Chromosome chr4 scaffold_83,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_83, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (25%)
          Length = 614

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 638 cttatagctatgcctatgatgatgcaaccagcactttcac 677
           |||||||||| |||||||||||||| ||||||||||||||
Sbjct: 92  cttatagctacgcctatgatgatgccaccagcactttcac 131