Miyakogusa Predicted Gene

Lj3g3v0429620.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0429620.1 tr|A9PE71|A9PE71_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_654056 PE=2 SV=1,80.95,0.19,
,CUFF.40768.1
         (261 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75207 similar to UniRef100_Q5JL96 Cluster: Zinc finge...    78   3e-14
gnl|LJGI|TC82502 similar to UniRef100_A7QNP4 Cluster: Chromosome...    56   1e-07
gnl|LJGI|AV412414                                                      52   2e-06

>gnl|LJGI|TC75207 similar to UniRef100_Q5JL96 Cluster: Zinc finger protein ZFP-like;
           n=1; Oryza sativa Japonica Group|Rep: Zinc finger
           protein ZFP-like - Oryza sativa subsp. japonica (Rice),
           partial (32%)
          Length = 613

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 194 aggttcagcagagctgcatcaactgtggtgtttgcatgagcaagtactttagtgagacat 253
           |||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||| |||||
Sbjct: 515 aggttcagcagaactgtatcaactgtggtgtttgcatgggcaagtacttctgtgcgacat 574

              
Query: 254 gta 256
           |||
Sbjct: 575 gta 577


>gnl|LJGI|TC82502 similar to UniRef100_A7QNP4 Cluster: Chromosome undetermined
           scaffold_133, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (44%)
          Length = 1195

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 196 gttcagcagagctgcatcaactgtggtgtttgcatgagcaagtacttt 243
           ||||||||| ||||||| |||||||| || |||||| |||||||||||
Sbjct: 693 gttcagcagtgctgcataaactgtggagtatgcatgggcaagtacttt 740


>gnl|LJGI|AV412414 
          Length = 402

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 193 caggttcagcagagctgcatcaactgtggtgtttgcatgagcaagtactttagtgagaca 252
           |||||| || || |||| |||| ||||| |||||||||| ||||||||||| ||| ||||
Sbjct: 141 caggttaagtagggctgtatcatctgtgatgtttgcatgggcaagtacttttgtgggaca 200

             
Query: 253 tg 254
           ||
Sbjct: 201 tg 202