Miyakogusa Predicted Gene

Lj3g3v0429250.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0429250.1 tr|G7IM52|G7IM52_MEDTR Disease-resistance protein
OS=Medicago truncatula GN=MTR_2g083650 PE=4
SV=1,72.54,0,TIR,Toll/interleukin-1 receptor homology (TIR) domain; no
description,NULL; NB-ARC,NB-ARC; DISEASE R,CUFF.40793.1
         (1650 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS343073 weakly similar to UniRef100_A7QHI1 Cluster: Ch...   299   3e-80
gnl|LJGI|TC81691 weakly similar to UniRef100_A2Q338 Cluster: RNA...   188   8e-47

>gnl|LJGI|FS343073 weakly similar to UniRef100_A7QHI1 Cluster: Chromosome chr5
           scaffold_98, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr5 scaffold_98, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (13%)
          Length = 827

 Score =  299 bits (151), Expect = 3e-80
 Identities = 444/539 (82%), Gaps = 2/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 45  atacgatgtgttcattagttttagaggtcccgaaacccgcaatacttttgttgatcatct 104
           |||||| |||||||| ||||| |||||| | || || ||||| || ||||| ||||||||
Sbjct: 290 atacgacgtgttcatcagtttcagaggttctgacactcgcaacacctttgtggatcatct 349

                                                                       
Query: 105 ttacaaccacctcgtcaagaaaggcatttttgccttcaaggatgaccaaaggcttgagaa 164
           ||||  ||| ||||||   ||||||||||| | ||||||||||||| | | |||  ||||
Sbjct: 350 ttacgcccatctcgtccgaaaaggcattttcgtcttcaaggatgacaagaagctccagaa 409

                                                                       
Query: 165 aggagaacccatttcattgcagcttctacaagcgattaaagattcaagggtttccgtcgt 224
           ||||||  ||||||||   |||||||||||||| |||  | ||||| | |||||  | ||
Sbjct: 410 aggagagtccatttcagctcagcttctacaagcaattcgaaattcacgagtttctattgt 469

                                                                       
Query: 225 cgtcttctcaagagattacgcttcctcaacatggtgtttggatgaactggctgctattgc 284
            || ||||| | | |||| |||   ||||  ||||||||||||||| |||||||||||||
Sbjct: 470 tgttttctcgaaaaattatgctgagtcaaggtggtgtttggatgaaatggctgctattgc 529

                                                                       
Query: 285 tgaatgccatgaagaattaaaacaaactgttttccctgttttttatgatgttgatccatc 344
           |||||||  |||||| || || |||||||||||||||||||| |||||||| ||||| ||
Sbjct: 530 tgaatgctgtgaagattttaagcaaactgttttccctgttttctatgatgtggatccttc 589

                                                                       
Query: 345 tcatgttcgaaaacaggatggggtgtaccatgatgcctttgttttacacacccagaaatt 404
           || |||  |||| ||| ||||||||||  |  ||||||||||||| ||||  | || |||
Sbjct: 590 tcctgtaagaaaccagaatggggtgtatgaaaatgcctttgttttccacatgctgagatt 649

                                                                       
Query: 405 caaatatgacccggacaaggttgatcggtggaagagagctatgaggactttggctggatc 464
           |||| ||||  | |||| ||||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 650 caaacatgatgcagacagggttgatcgatggaagagagctatgagaagtttggctggatc 709

                                                                       
Query: 465 agctggttgggatgtcaggaataagccggagtttgcagagattgaaaaaattgttcaagc 524
           ||| ||||||||||||||||||||||| || |||  |||||||||||| |||||| | ||
Sbjct: 710 agcaggttgggatgtcaggaataagccagaatttcgagagattgaaaatattgttgaggc 769

                                                                      
Query: 525 agtgataaaaacactgggtcataaa-ttctcaacatttactaatggtctagttgggata 582
           ||| ||| || || ||||||||||| ||||| | ||||| |||||||||||||||||||
Sbjct: 770 agttatagaagcattgggtcataaatttctc-agatttagtaatggtctagttgggata 827


>gnl|LJGI|TC81691 weakly similar to UniRef100_A2Q338 Cluster: RNA-directed DNA
           polymerase; n=1; Medicago truncatula|Rep: RNA-directed
           DNA polymerase - Medicago truncatula (Barrel medic),
           partial (8%)
          Length = 432

 Score =  188 bits (95), Expect = 8e-47
 Identities = 185/212 (87%), Gaps = 5/212 (2%)
 Strand = Plus / Plus

                                                                       
Query: 483 gaataagccggagtttgcagagattgaaaaaattgttcaagcagtgataaaaacactggg 542
           ||||||||| |||||| |||||||||||||||| ||||||||   ||| |||||  ||||
Sbjct: 21  gaataagcccgagtttncagagattgaaaaaat-gttcaagccaggatcaaaaccttggg 79

                                                                       
Query: 543 tcataaattctcaacatttactaatggtctagttgggataca-acctcacattgaagaaa 601
           |||||||||||||| ||||| |||||||||||||||||||||  || | | |||||||||
Sbjct: 80  tcataaattctcaagatttagtaatggtctagttgggatacagccccccccttgaagaaa 139

                                                                       
Query: 602 tagaaaatcttttaaaattgagctcagaggaggaggatgtttttcgagttttaggaattt 661
           || ||||||||||||||||||||| |||||| || ||   ||||||||||||||| ||||
Sbjct: 140 tataaaatcttttaaaattgagctaagaggatgaaga---ttttcgagttttaggtattt 196

                                           
Query: 662 gggggatgggtggaataggaaagacaactcat 693
           || ||| ||| |||||||||||||||||||||
Sbjct: 197 ggaggacgggcggaataggaaagacaactcat 228