Miyakogusa Predicted Gene
- Lj3g3v0429140.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0429140.1 tr|D8U6K0|D8U6K0_VOLCA Plastid/chloroplast
ribosomal protein S20 OS=Volvox carteri GN=prpS20 PE=3
SV,47.2,2e-19,no description,Ribosomal protein S20;
Ribosomal_S20p,Ribosomal protein S20; Ribosomal_S20,Ribosomal
,CUFF.40751.1
(537 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58931 similar to UniRef100_A7P1S0 Cluster: Chromosome... 1065 0.0
gnl|LJGI|GO023289 similar to UniRef100_A7P1S0 Cluster: Chromosom... 329 1e-89
>gnl|LJGI|TC58931 similar to UniRef100_A7P1S0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (56%)
Length = 925
Score = 1065 bits (537), Expect = 0.0
Identities = 537/537 (100%)
Strand = Plus / Plus
Query: 1 atggcagcagtttcgtgctcatggctcacccttccctccaaattcagagacctttccccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 atggcagcagtttcgtgctcatggctcacccttccctccaaattcagagacctttccccc 115
Query: 61 gcttcctcttcttcctcctccatctccaattccgcttctctgagtttctgcagaaacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gcttcctcttcttcctcctccatctccaattccgcttctctgagtttctgcagaaacatc 175
Query: 121 tctcacactgtcttctcacaaggtagcttgtcgttgagtccagtgcagaggcgtaccctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tctcacactgtcttctcacaaggtagcttgtcgttgagtccagtgcagaggcgtaccctg 235
Query: 181 gtggtatgcgaggtagtgacgaagaagaaggtggattctgctattaagagagctcgccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gtggtatgcgaggtagtgacgaagaagaaggtggattctgctattaagagagctcgccag 295
Query: 241 gccgagaaacgccgcatttacaacaaagcccgcaaatcggagataaaaacccggatgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gccgagaaacgccgcatttacaacaaagcccgcaaatcggagataaaaacccggatgaag 355
Query: 301 aaggttttggaagcattggaatcgcttaagaagaaaagcgatgcacaaccagaagaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaggttttggaagcattggaatcgcttaagaagaaaagcgatgcacaaccagaagaaata 415
Query: 361 cttccaattgagaaactgattggagaggcatactcggtaattgacaaggcaataagagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cttccaattgagaaactgattggagaggcatactcggtaattgacaaggcaataagagta 475
Query: 421 ggcacgctgcacaggaacacgggaggacatcgaaagtctaggcttgccagaagaaagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggcacgctgcacaggaacacgggaggacatcgaaagtctaggcttgccagaagaaagaag 535
Query: 481 gtcgtggagatccaccatggctggtataccccagtttctgatggcagtgtctgaaac 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtcgtggagatccaccatggctggtataccccagtttctgatggcagtgtctgaaac 592
>gnl|LJGI|GO023289 similar to UniRef100_A7P1S0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (61%)
Length = 765
Score = 329 bits (166), Expect = 1e-89
Identities = 289/330 (87%)
Strand = Plus / Plus
Query: 206 agaaggtggattctgctattaagagagctcgccaggccgagaaacgccgcatttacaaca 265
||||||| ||||||| | | ||||||| |||||||||| |||| ||||||| | ||||||
Sbjct: 258 agaaggtagattctgttgtgaagagaggtcgccaggccaagaatcgccgcaataacaaca 317
Query: 266 aagcccgcaaatcggagataaaaacccggatgaagaaggttttggaagcattggaatcgc 325
|||||||||||| ||||||||| || | || |||| ||||||||| ||||||||||
Sbjct: 318 gagcccgcaaatcattgataaaaactcgcaccaaaaaggctttggaagctttggaatcgc 377
Query: 326 ttaagaagaaaagcgatgcacaaccagaagaaatacttccaattgagaaactgattggag 385
||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 378 ttaagaataaaaaagatgcacaaccagaagaaatccttccaattgagaaactaattagag 437
Query: 386 aggcatactcggtaattgacaaggcaataagagtaggcacgctgcacaggaacacgggag 445
|||| ||||||||||| || |||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 438 aggcttactcggtaatcgataaggcagtgagagtgggcacaatgcacaggaacacgggag 497
Query: 446 gacatcgaaagtctaggcttgccagaagaaagaaggtcgtggagatccaccatggctggt 505
|| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct: 498 aacgtcgaaagtctaggcttgccagaagtaagaagcttgtggagatccaccatggctggt 557
Query: 506 ataccccagtttctgatggcagtgtctgaa 535
||||||||| |||||| |||||||||||||
Sbjct: 558 ataccccaggttctgaaggcagtgtctgaa 587
Score = 61.9 bits (31), Expect = 4e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 4 gcagcagtttcgtgctcatggctcacccttccctccaaa 42
||||||||||||||||||||||| || ||||||||||||
Sbjct: 171 gcagcagtttcgtgctcatggctgacacttccctccaaa 209