Miyakogusa Predicted Gene
- Lj3g3v0428420.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0428420.2 Non Chatacterized Hit- tr|C5YWM0|C5YWM0_SORBI
Putative uncharacterized protein Sb09g030170
OS=Sorghu,41.33,0.0000004,TPR REPEAT CONTAINING PROTEIN,NULL;
TPR-like,NULL; TPR,Tetratricopeptide repeat;
TPR_REGION,Tetratri,CUFF.40699.2
(1296 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74591 weakly similar to UniRef100_Q9SIN1 Cluster: Exp... 1596 0.0
gnl|LJGI|TC75150 similar to UniRef100_A7P1Y9 Cluster: Chromosome... 107 2e-22
>gnl|LJGI|TC74591 weakly similar to UniRef100_Q9SIN1 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein - Arabidopsis
thaliana (Mouse-ear cress), partial (25%)
Length = 1142
Score = 1596 bits (805), Expect = 0.0
Identities = 842/860 (97%)
Strand = Plus / Plus
Query: 1 atggaggagaaactggcacattctgggagacccatgaacgagttagggctgagtgagcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atggaggagaaactggcacattctgggagacccatgaacgagttagggctgagtgagcgg 342
Query: 61 ttacgcgactcaccgagttgcggtggtgatgatgggaacaagccagatttccgagaactc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 343 ttacgcgactcaccgagttgcggtggtgatgatgggaacaagccaaatttccgagaactc 402
Query: 121 gatctgggttcacccatttcgccgttaccggggcgacaccaccgacagagtgcggcggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gatctgggttcacccatttcgccgttaccggggcgacaccaccgacagagtgcggcggcg 462
Query: 181 gcgacgactacaagtactagtaccaccactagtagtggttcgtctggggcgggttcttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcgacgactacaagtactagtaccaccactagtagtggttcgtctggggcgggttcttgc 522
Query: 241 cggagtgggcataatctggttacgaggagatccgattccggtgagctttctgtgcagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cggagtgggcataatctggttacgaggagatccgattccggtgagctttctgtgcagaat 582
Query: 301 agtccgacccggagtgtgaaaccgggtcaccggagatccgattcgtgttcgtcgcagccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agtccgacccggagtgtgaaaccgggtcaccggagatccgattcgtgttcgtcgcagccg 642
Query: 361 ttgatatactcagggcagagtcagagatctccttcctcgtcttcgtcgtcgtccggtgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttgatatactcagggcagagtcagagatctccttcctcgtcttcgtcgtcgtccggtgct 702
Query: 421 gccgctgttaattcgccgccggtgaatgttcttccggctgggaacatatgtccctccggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gccgctgttaattcgccgccggtgaatgttcttccggctgggaacatatgtccctccggc 762
Query: 481 agggttctcaagcctgccatggtggtgaaccggagctcgaggccggatgttttgggcaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 agggttctcaagcctgccatggtggtgaaccggagctcgaggccggatgttttgggcaca 822
Query: 541 gggacagggaattacgggcatgggagtataatgcggggcggtagaggcgtcnnnnnnnnn 600
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gggacagggaattacgggcatgggagtataatgcggggcggtagaggcgtcggtggtggt 882
Query: 601 nnnnnnnncagcactggcggtgaggctgggaggttgagcggtggaagcgattcggtgaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ggtggtggcagcactggcggtgaggctgggaggttgagcggtggaagcgattcggtgaag 942
Query: 661 agggttgaggcggaagaggttaagagagcagggaatgaggagtacaggagggggcggttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 agggttgaggcggaagaggttaagagagcagggaatgaggagtacaggagggggcggttt 1002
Query: 721 gtggaggcgttgcgcctgtatgatcgggcaattgcattgtctccgggcaatgtggcttac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 gtggaggcgttgcgcctgtatgatcgggcaattgcattgtctccgggcaatgtggcttac 1062
Query: 781 cggagcaacagggcggcggcgttgagtgctttaggacggttgtcggatgcggtaacgacg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 cggagcaacagggcggcggcgttgagtgctttaggacggttgtcggatgcggtaacgacg 1122
Query: 841 tgtgaggaggctttggggtt 860
||||||||||||||||||||
Sbjct: 1123 tgtgaggaggctttggggtt 1142
>gnl|LJGI|TC75150 similar to UniRef100_A7P1Y9 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (27%)
Length = 1074
Score = 107 bits (54), Expect = 2e-22
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 841 tgtgaggaggctttggggttggatcctaattatggaagggctcatcagcgcttggcaact 900
|||||||| ||| || | ||||||||||||||| | |||||||||||||| ||||| ||
Sbjct: 950 tgtgaggaagctgtgagattggatcctaattatagcagggctcatcagcgtttggcttct 1009
Query: 901 atctttcttaggttaggacatgttgagaatgctaggaagcacctttgttatcatgggctg 960
| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 1010 ctttttctcaggttaggacaagttgagaatgccaggaagcacctctgttatccggggctg 1069
Query: 961 ca 962
||
Sbjct: 1070 ca 1071