Miyakogusa Predicted Gene
- Lj3g3v0424250.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0424250.1 CUFF.40687.1
(681 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66505 similar to UniRef100_Q2HS67 Cluster: Cyclin-lik... 791 0.0
gnl|LJGI|TC79393 200 8e-51
gnl|LJGI|FS324043 weakly similar to UniRef100_Q2HWB4 Cluster: Cy... 66 3e-10
gnl|LJGI|TC73199 weakly similar to UniRef100_Q2HS67 Cluster: Cyc... 66 3e-10
gnl|LJGI|BW626991 weakly similar to UniRef100_A7PQD5 Cluster: Ch... 64 1e-09
gnl|LJGI|TC57901 similar to UniRef100_A2Q2H0 Cluster: F-box prot... 64 1e-09
>gnl|LJGI|TC66505 similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box; F-box protein
interaction domain; n=1; Medicago truncatula|Rep:
Cyclin-like F-box; F-box protein interaction domain -
Medicago truncatula (Barrel medic), partial (17%)
Length = 1292
Score = 791 bits (399), Expect = 0.0
Identities = 417/423 (98%)
Strand = Plus / Plus
Query: 259 cagttggtgattgtttcccttgacatgcgtcaagaggcataccggttattgtcactacct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cagttggtgattgtttcccttgacatgcgtcaagaggcataccggttattgtcactacct 818
Query: 319 cagggtacttctgagctgccttatgctgagatacaggttttggggaattgcctttgcctt 378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 819 cagggtacttctgagctgccttctgctgagatacaggttttggggaattgcctttgcctt 878
Query: 379 ttttatgactttaagagaacccattttgttgcctggaaaatgagtgagtatggacttcca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttttatgactttaagagaacccattttgttgcctggaaaatgagtgagtatggacttcca 938
Query: 439 gagtcttggactcctttgctgactatcagttaccaacatcttcgatgggatcgtcgtttt 498
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 939 gagtcttggactcctttgctgactatcagttacgaacatcttcgatgggatcatcgtttt 998
Query: 499 tatcttcatcaatggctcatatgcttgtgtggagatggacacatctttatgctcgccaaa 558
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 tatcttaatcaatggctcatatgcttgtgtggagatggacacatctttatgctcgccaaa 1058
Query: 559 aaacagaaattggttatcatatataatctaagtgataatggtgtcaaatatgttgaactt 618
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 1059 aaacagaaattggttatcatatataatctaagtgataatagtgtgaaatatgttgaactt 1118
Query: 619 gccagcaacaaactttggttggatgccaatgattatgtagagagtctggtttcaccatgt 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 gccagcaacaaactttggttggatgccaatgattatgtagagagtctggtttcaccatgt 1178
Query: 679 taa 681
|||
Sbjct: 1179 taa 1181
Score = 486 bits (245), Expect = e-137
Identities = 257/261 (98%)
Strand = Plus / Plus
Query: 1 atggaaatcgtaaccgatgttttcccttccgaactcgtaatagaaatcttgtcatggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 atggaaatcgtaaccgatgttttcccttccgaactcgtaatagaaatcttgtcatggctt 140
Query: 61 cctgtgttgagcttgataagattcaagtgcgtttgcaagtcatggaaatccctcatctct 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cctgtgttgagcttgatacgattcaagtgcgtttgcaagtcatggaaatccctcatctct 200
Query: 121 cacaacaaagcattcgccaaactgcaattggagagaacatcgctcaaaatcaaccacgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaacaaagcattcgccaaactgcaattggagagaacatcgctcaaaatcaaccacgta 260
Query: 181 atcctcacctcctctgactcctccttcattccgtgctctctgcctcgcttgctcgaggac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctcacctcctctgactcctccttcattccgtgctctctgcctcgcttgctcgaggag 320
Query: 241 ccatcatcgattatggaccag 261
|| || |||||||||||||||
Sbjct: 321 ccttcgtcgattatggaccag 341
>gnl|LJGI|TC79393
Length = 697
Score = 200 bits (101), Expect = 8e-51
Identities = 312/379 (82%), Gaps = 5/379 (1%)
Strand = Plus / Plus
Query: 307 ttgtcactacctcagggtacttctgagctgccttatgctgagatacaggttttggggaat 366
|||||||||||| |||||||| |||| ||||||| | ||||||||||||||||||||||
Sbjct: 222 ttgtcactacctaagggtactagtgagttgccttacgttgagatacaggttttggggaat 281
Query: 367 tgcctttgccttttttatgactttaagagaacccattttgttgcctggaaaatgagtgag 426
||||||||||||||| ||||| ||| ||||| |||||||||| |||||||||| |||
Sbjct: 282 tgcctttgcctttttcatgacgataatagaactcattttgttgggtggaaaatgacagag 341
Query: 427 tatggacttccagagtcttggactcctttgctgactatcagttaccaacatcttcgatgg 486
|||||| | ||||| |||||||||| | || ||| ||||||||| |||||| ||| |||
Sbjct: 342 tatggagtaccagaatcttggactcgtatgttgagtatcagttatcaacattttcaatgt 401
Query: 487 gatcgtcgtttttat-cttcatcaatggctcatatgcttgtgtggagatggacacatctt 545
|| | || || | | ||||| |||||| |||||||||||||||||||| ||||| |
Sbjct: 402 aat-gatgtcattctgcgtcatcgatggctggtatgcttgtgtggagatggaaacatcct 460
Query: 546 tatgctcgccaaaaaacag---aaattggttatcatatataatctaagtgataatggtgt 602
||||||||| ||| | || ||||||||||||| |||||||||||||||| ||||
Sbjct: 461 tatgctcgcaaaagatgagggcggtttggttatcatatttaatctaagtgataatagtgt 520
Query: 603 caaatatgttgaacttgccagcaacaaactttggttggatgccaatgattatgtagagag 662
||||||| | || || ||| ||| | ||||||||||| ||| | ||||| ||||||||
Sbjct: 521 gaaatatgatcaaattcccaccaaaagactttggttgggtgctgaggattacgtagagag 580
Query: 663 tctggtttcaccatgttaa 681
|||| ||||||| ||||||
Sbjct: 581 tctgatttcaccttgttaa 599
>gnl|LJGI|FS324043 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 574
Score = 65.9 bits (33), Expect = 3e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 81 attcaagtgcgtttgcaagtcatggaaatccctcatctctcacaacaaa 129
|||||||||||||||||| ||||||||||| ||||||||| || |||||
Sbjct: 141 attcaagtgcgtttgcaaatcatggaaatcactcatctctaacgacaaa 189
>gnl|LJGI|TC73199 weakly similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (11%)
Length = 654
Score = 65.9 bits (33), Expect = 3e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 81 attcaagtgcgtttgcaagtcatggaaatccctcatctctcacaacaaa 129
|||||||||||||||||| ||||||||||| ||||||||| || |||||
Sbjct: 111 attcaagtgcgtttgcaaatcatggaaatcactcatctctaacgacaaa 159
>gnl|LJGI|BW626991 weakly similar to UniRef100_A7PQD5 Cluster: Chromosome chr18
scaffold_24, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_24, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 459
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 81 attcaagtgcgtttgcaagtcatggaaatccctcatctct 120
|||||||||||||||||| ||||||||||| |||||||||
Sbjct: 166 attcaagtgcgtttgcaaatcatggaaatcactcatctct 205
>gnl|LJGI|TC57901 similar to UniRef100_A2Q2H0 Cluster: F-box protein interaction
domain; n=1; Medicago truncatula|Rep: F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 1406
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 81 attcaagtgcgtttgcaagtcatggaaatccctcatctct 120
|||||||||||||||||| ||||||||||| |||||||||
Sbjct: 108 attcaagtgcgtttgcaaatcatggaaatcactcatctct 147