Miyakogusa Predicted Gene
- Lj3g3v0420620.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0420620.1 tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein
OS=Oryza sativa subsp. japonica GN=OJ1439_F07.25 PE=4
SV,46.88,8e-19,SMALL NUCLEAR RIBONUCLEOPROTEIN,NULL; U1 SMALL NUCLEAR
RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR
RIBONUCL,NODE_54419_length_1029_cov_63.899902.path2.1
(693 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69910 similar to UniRef100_A7P4N7 Cluster: Chromosome... 1358 0.0
gnl|LJGI|TC77555 821 0.0
>gnl|LJGI|TC69910 similar to UniRef100_A7P4N7 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 1088
Score = 1358 bits (685), Expect = 0.0
Identities = 691/693 (99%)
Strand = Plus / Plus
Query: 1 atggcggaaccctacgacccatacgctccttccaccgccgctcccgctgacggagcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 atggcggaaccctacgacccatacgctccttccaccgccgctcccgctgacggagcaagc 96
Query: 61 attgcgaggagtagctttgctggttacattccatctgagccagcatccttggcttcgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 attgcgaggagtagctttgctggttacattccatctgagccagcatccttggcttcgcct 156
Query: 121 tatcctcgtttctcgaattcggctgaattgcgcggaatcggagcagattacctacagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tatcctcgtttctcgaattcggctgaattgcgcggaatcggagcagattacctacagaat 216
Query: 181 gatataaacttgtcgaggctggggccgtatagtagtgctgatgatgctgttagctccaga 240
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 217 gatataaacttgtcgagggtggggccgtatagtagtgttgatgatgctgttagctccaga 276
Query: 241 gttctttctgaacctaacatcaagggttattcgcctcttgacgatcctgttctgaggacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gttctttctgaacctaacatcaagggttattcgcctcttgacgatcctgttctgaggacg 336
Query: 301 aaacgggatacttcattgggcgttaatcctgatgtgagcagtgaaaggccaatccctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaacgggatacttcattgggcgttaatcctgatgtgagcagtgaaaggccaatccctaaa 396
Query: 361 gccaatcgcgaaggtcttgcggattcaaacgttctatttgtggatggtcttccgagagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gccaatcgcgaaggtcttgcggattcaaacgttctatttgtggatggtcttccgagagac 456
Query: 421 tgcactagaagggaagttggccatcttttccgtccctttattggctataaggatatcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgcactagaagggaagttggccatcttttccgtccctttattggctataaggatatcaga 516
Query: 481 gttgttcacaaagagcctagacgtagtggagacaaggctatggttttgtgttttgtagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gttgttcacaaagagcctagacgtagtggagacaaggctatggttttgtgttttgtagag 576
Query: 541 tttgatgactccaaatgtgctctcactgccatggaagctctacaaggctacaagtttgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttgatgactccaaatgtgctctcactgccatggaagctctacaaggctacaagtttgat 636
Query: 601 gataaaaaaccagattcacggaccttaaaaatccagtttgcgcactttcctttccgcccg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gataaaaaaccagattcacggaccttaaaaatccagtttgcgcactttcctttccgcccg 696
Query: 661 ccagctgataacgggacaactacaacttaacag 693
|||||||||||||||||||||||||||||||||
Sbjct: 697 ccagctgataacgggacaactacaacttaacag 729
>gnl|LJGI|TC77555
Length = 504
Score = 821 bits (414), Expect = 0.0
Identities = 420/422 (99%)
Strand = Plus / Plus
Query: 1 atggcggaaccctacgacccatacgctccttccaccgccgctcccgctgacggagcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 atggcggaaccctacgacccatacgctccttccaccgccgctcccgctgacggagcaagc 142
Query: 61 attgcgaggagtagctttgctggttacattccatctgagccagcatccttggcttcgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 attgcgaggagtagctttgctggttacattccatctgagccagcatccttggcttcgcct 202
Query: 121 tatcctcgtttctcgaattcggctgaattgcgcggaatcggagcagattacctacagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tatcctcgtttctcgaattcggctgaattgcgcggaatcggagcagattacctacagaat 262
Query: 181 gatataaacttgtcgaggctggggccgtatagtagtgctgatgatgctgttagctccaga 240
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 gatataaacttgtcgagggtggggccgtatagtagtgttgatgatgctgttagctccaga 322
Query: 241 gttctttctgaacctaacatcaagggttattcgcctcttgacgatcctgttctgaggacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttctttctgaacctaacatcaagggttattcgcctcttgacgatcctgttctgaggacg 382
Query: 301 aaacgggatacttcattgggcgttaatcctgatgtgagcagtgaaaggccaatccctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaacgggatacttcattgggcgttaatcctgatgtgagcagtgaaaggccaatccctaaa 442
Query: 361 gccaatcgcgaaggtcttgcggattcaaacgttctatttgtggatggtcttccgagagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccaatcgcgaaggtcttgcggattcaaacgttctatttgtggatggtcttccgagagac 502
Query: 421 tg 422
||
Sbjct: 503 tg 504