Miyakogusa Predicted Gene
- Lj3g3v0409470.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0409470.1 Non Chatacterized Hit- tr|C4J1R7|C4J1R7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.28,0.0000000000009,RNA recognition motif,RNA recognition motif
domain; seg,NULL; RNA-binding domain, RBD,NULL; RRM_6,NU,CUFF.40655.1
(945 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61397 similar to UniRef100_A7QK80 Cluster: Chromosome... 1610 0.0
gnl|LJGI|TC71062 similar to UniRef100_A7QK80 Cluster: Chromosome... 347 8e-95
gnl|LJGI|TC81023 homologue to UniRef100_Q7KQZ4-2 Cluster: Isofor... 283 1e-75
gnl|LJGI|TC68256 66 4e-10
>gnl|LJGI|TC61397 similar to UniRef100_A7QK80 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (73%)
Length = 1484
Score = 1610 bits (812), Expect = 0.0
Identities = 865/891 (97%)
Strand = Plus / Plus
Query: 55 actggcagcaaattggactcaaaaccaaacctggattctgaattcaacatgcagaaactt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggcagcaaattggactcaaaaccaaacctggattctgaattcaacatgcagaaactt 380
Query: 115 gttgacattttcaccaagttgaatcctttggctgaggagtttatcccttcatcctatgct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgacattttcaccaagttgaatcctttggctgaggagtttatcccttcatcctatgct 440
Query: 175 gctgctgcccaccgtgatcaccttcatcagggctttaatcagtggtcacctaacccattt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgctgcccaccgtgatcaccttcatcagggctttaatcagtggtcacctaacccattt 500
Query: 235 ctggtnnnnnnnnnnnnnnnnnngcccttagctgatgatcagtacccgaacgcgaacaat 294
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggtcaacaacaacaacaacaagcccttagctgatgatcagtacccgaacgcgaacaat 560
Query: 295 cgaaggagaagaaacaattttaaccaagggggaaggagatttactggaagagtacttaag 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgaaggagaagaaacaattttaaccaagggggaaggagatttactggaagagtacttaaa 620
Query: 355 gctcagagagaagacagcgttagaagaacggtttatgtttctgatattgatcagcatgta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcagagagaagacagcgttagaagaacggtttatgtttctgatattgatcagcatgta 680
Query: 415 actgaggagcggcttgctgccttattcaccacttgtggatcagtaattgattgtcgaatt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgaggagcggcttgctgccttattcaccacttgtggatcagtaattgattgtcgaatt 740
Query: 475 tgtggtgatccacattcagttctccgttttgcatttgtggagttcgcagatgagtatggt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtggtgatccacattcagttctccgttttgcatttgtggagttcgcagatgagtatggt 800
Query: 535 gcaagggcagctttaaatctcagtggcactgtccttggatactatccagtcagggtgctt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcaagggcagctttaaatctcagtggcactgtccttggatactatccagtcagggtgctt 860
Query: 595 ccttcaaaaactgctattcttcctgtgaatcctacattccttcctaggtcagatgatgag 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccttcaaaaactgctattcttcctgtgaatcctacattccttcctaggtcagatgatgag 920
Query: 655 cgtgaaatgtgttccaggactgtctactgtacaaatattgataaaaaggtttctcaggct 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cgtgaaatgtgttccaggactgtctactgtacaaatattgataaaaaggtttctcaggct 980
Query: 715 gaagtgaagaannnnnnngaaatatcttgtggtgaggttactcgcatacggctcttggga 774
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gaagtgaagaatttttttgaaatatcttgtggtgaggttactcgcatacggctcttggga 1040
Query: 775 gatcatgtgcattcaactcgaattgctttcgtggaatttgcaatagcagaaagtgccatt 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gatcatgtgcattcaactcgaattgctttcgtggaatttgcaatagcagaaagtgccatt 1100
Query: 835 attgccctaagttgcagtgggatgctcttgggaacccagccagtcagggttagcccttca 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 attgccctaagttgcagtgggatgctcttgggaacccagccagtcagggttagcccttca 1160
Query: 895 aagacacctgtgaggccaagggttcctcgcccaacaacagcacattagctg 945
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 aagacacctgtgaggccaagggttcctcgcccaacaacagcacattagctg 1211
Score = 56.0 bits (28), Expect = 4e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 atggctgcggctactgagattccttcct 28
||||||||||||||||||||||||||||
Sbjct: 267 atggctgcggctactgagattccttcct 294
>gnl|LJGI|TC71062 similar to UniRef100_A7QK80 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 745
Score = 347 bits (175), Expect = 8e-95
Identities = 309/356 (86%)
Strand = Plus / Plus
Query: 562 actgtccttggatactatccagtcagggtgcttccttcaaaaactgctattcttcctgtg 621
||||| || |||||||||||||| ||||| |||||||| |||||||||| ||||| |||
Sbjct: 1 actgtgctcggatactatccagtgagggtccttccttctcaaactgctatccttcccgtg 60
Query: 622 aatcctacattccttcctaggtcagatgatgagcgtgaaatgtgttccaggactgtctac 681
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 61 catcctacattcctccctaggtcggatgatgagcgggaaatgtgttccaggactgtctat 120
Query: 682 tgtacaaatattgataaaaaggtttctcaggctgaagtgaagaannnnnnngaaatatct 741
||||||||||||||||||||| ||||||| |||||||||||||| ||| | ||
Sbjct: 121 tgtacaaatattgataaaaagatttctcaagctgaagtgaagaatttttttgaatcagct 180
Query: 742 tgtggtgaggttactcgcatacggctcttgggagatcatgtgcattcaactcgaattgct 801
|||||||||||||| ||| | |||| ||||| |||||||||||||||||||||||||||
Sbjct: 181 tgtggtgaggttacacgcttgaggcttttgggggatcatgtgcattcaactcgaattgct 240
Query: 802 ttcgtggaatttgcaatagcagaaagtgccattattgccctaagttgcagtgggatgctc 861
|| |||||||||||| | ||||||||||| || |||| || | ||| ||||||||||||
Sbjct: 241 tttgtggaatttgcattggcagaaagtgctatcgttgcgcttaattgtagtgggatgctc 300
Query: 862 ttgggaacccagccagtcagggttagcccttcaaagacacctgtgaggccaagggt 917
|||||||||||||| |||||||| || || |||||||| || ||||||||||||||
Sbjct: 301 ttgggaacccagcctgtcagggtaagtccatcaaagactccagtgaggccaagggt 356
>gnl|LJGI|TC81023 homologue to UniRef100_Q7KQZ4-2 Cluster: Isoform A of Q7KQZ4 ; n=1;
Drosophila melanogaster|Rep: Isoform A of Q7KQZ4 -
Drosophila melanogaster (Fruit fly), partial (3%)
Length = 610
Score = 283 bits (143), Expect = 1e-75
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 55 actggcagcaaattggactcaaaaccaaacctggattctgaattcaacatgcagaaactt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 actggcagcaaattggactcaaaaccaaacctggattctgaattcaacatgcagaaactt 84
Query: 115 gttgacattttcaccaagttgaatcctttggctgaggagtttatcccttcatcctatgct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gttgacattttcaccaagttgaatcctttggctgaggagtttatcccttcatcctatgct 24
Query: 175 gctgctgcccaccgtgatcacct 197
|||||||||||||||||||||||
Sbjct: 23 gctgctgcccaccgtgatcacct 1
Score = 56.0 bits (28), Expect = 4e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 atggctgcggctactgagattccttcct 28
||||||||||||||||||||||||||||
Sbjct: 197 atggctgcggctactgagattccttcct 170
>gnl|LJGI|TC68256
Length = 744
Score = 65.9 bits (33), Expect = 4e-10
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 63 caaattggactcaaaaccaaacctggattctgaattcaacatgcagaaacttgttgacat 122
|||| |||||||||||||||| | || || ||||||| ||||||| || ||||||||
Sbjct: 425 caaaatggactcaaaaccaaagccagaatcagaattcactgtgcagaagctggttgacat 484
Query: 123 tttcaccaagttgaatcctttggctgaggagtttatcccttcatc 167
||||| ||| ||||||||||||| |||||||| | ||||||||
Sbjct: 485 gttcacaaagctgaatcctttggccaaggagttttttccttcatc 529