Miyakogusa Predicted Gene
- Lj3g3v0397270.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0397270.1 gene.Ljchr3_pseudomol_20120830.path1.gene591.1
(1321 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS343486 similar to UniRef100_Q0J605 Cluster: Os08g0382... 278 8e-74
gnl|LJGI|TC76079 weakly similar to UniRef100_Q2HWB4 Cluster: Cyc... 178 6e-44
gnl|LJGI|AV772011 weakly similar to UniRef100_A7PWQ8 Cluster: Ch... 56 6e-07
gnl|LJGI|FS324043 weakly similar to UniRef100_Q2HWB4 Cluster: Cy... 54 2e-06
gnl|LJGI|TC73199 weakly similar to UniRef100_Q2HS67 Cluster: Cyc... 54 2e-06
>gnl|LJGI|FS343486 similar to UniRef100_Q0J605 Cluster: Os08g0382800 protein; n=1;
Oryza sativa Japonica Group|Rep: Os08g0382800 protein -
Oryza sativa subsp. japonica (Rice), partial (6%)
Length = 818
Score = 278 bits (140), Expect = 8e-74
Identities = 175/186 (94%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 661 aatggttggagagacattcaaaatttcccactgcttccatttagctatgatgattggggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 629 aatggttggagagacattcaaaatttcccactgcttccatttagctatgatgattcgggt 688
Query: 721 gtaaatgatggggtgcatttgagtggcactattaactggatgacatc---tcgtgataaa 777
||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct: 689 gtaaatgatggggcgcatttgagtggcactattaactggatggcatctcgtcgtgatgaa 748
Query: 778 tccgcgccttattataatccagtgactattactgttgaacaacttgggatcctttcactt 837
||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 749 tccgcgcctcattataatccagagactattactgttgaacaacttgtcatcctttcactt 808
Query: 838 gatctt 843
||||||
Sbjct: 809 gatctt 814
Score = 135 bits (68), Expect = 8e-31
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 96 tgcggaggtcctatcatggcttccggtgaaatccctcacgcgactcaagtgtgtctgcaa 155
|||||||||||||||||||||||||||||||||||| | |||||| | | ||||||||
Sbjct: 76 tgcggaggtcctatcatggcttccggtgaaatccctgatgcgactgagttccgtctgcaa 135
Query: 156 atcctggaactcactcatcatctccgatcaaaccttcatcaaattgcaccttcacagatc 215
|||||||||| |||||||| ||||||||||||||||||||||| |||||| || ||||
Sbjct: 136 atcctggaacaaactcatcacctccgatcaaaccttcatcaaatcacaccttgaccgatc 195
Query: 216 ggca 219
||||
Sbjct: 196 ggca 199
Score = 67.9 bits (34), Expect = 2e-10
Identities = 81/96 (84%), Gaps = 3/96 (3%)
Strand = Plus / Plus
Query: 328 ccatggatctcacttgcccataaccctcgctaccgattgaagaaa---ggtgaccgctac 384
||||||||||| |||||||||||||||||| ||||||||| | || |||| |||||
Sbjct: 299 ccatggatctcgcttgcccataaccctcgccaccgattgagggaatattttgacagctac 358
Query: 385 catgtcgtcggttgctgcaatgggttgatctgcttg 420
| |||||||||| |||||||||||||| ||||||
Sbjct: 359 gacgtcgtcggttcttgcaatgggttgatatgcttg 394
>gnl|LJGI|TC76079 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (11%)
Length = 818
Score = 178 bits (90), Expect = 6e-44
Identities = 137/152 (90%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 94 attgcggaggtcctatcatggcttccggtgaaatccctcacgcgactcaagtgtgtctgc 153
||||||||||||||||||||||||||||||||| |||| |||||||| ||| || |||
Sbjct: 87 attgcggaggtcctatcatggcttccggtgaaacatctcatgcgactcaggtgcgtgtgc 146
Query: 154 aaatcctggaactcactcatcatctccgatcaaaccttcatcaaattgcaccttcacaga 213
|| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 147 aagtcctggaacactctcatcatctccgatcacaccttcatcaaattgcaccttcacaga 206
Query: 214 tcggcactgcacggcaaaccccatctcttgtt 245
||||||||||| ||||||||| ||||||||
Sbjct: 207 tcggcactgca---caaaccccacctcttgtt 235
Score = 115 bits (58), Expect = 7e-25
Identities = 103/118 (87%)
Strand = Plus / Plus
Query: 731 gggtgcatttgagtggcactattaactggatgacatctcgtgataaatccgcgccttatt 790
|||||||||||||||||||| |||||||||| ||||||||| || ||||||| || ||
Sbjct: 701 gggtgcatttgagtggcactcttaactggatcacatctcgtaatgaatccgctagttgtt 760
Query: 791 ataatccagtgactattactgttgaacaacttgggatcctttcacttgatcttaggac 848
|||||| || ||||||||||||||||||||||| ||| ||||| |||| |||| ||||
Sbjct: 761 ataatcgagagactattactgttgaacaacttgcgattctttcgcttggtcttgggac 818
Score = 61.9 bits (31), Expect = 9e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 464 gtttctggaaccctgccactaggttaatgtctgaaaaattagg 506
||||||||||||| || || |||||||||||||||||||||||
Sbjct: 449 gtttctggaacccggcgacgaggttaatgtctgaaaaattagg 491
>gnl|LJGI|AV772011 weakly similar to UniRef100_A7PWQ8 Cluster: Chromosome chr19
scaffold_35, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_35, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 447
Score = 56.0 bits (28), Expect = 6e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1252 tatgttgaaagcttggtttcaccattgagggtcagatcttctac 1295
||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 359 tatgttgaaagcttggtttcacccttgagagttggatcttctac 316
>gnl|LJGI|FS324043 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 574
Score = 54.0 bits (27), Expect = 2e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 112 tggcttccggtgaaatccctcacgcgactcaagtgtgtctgcaaatcctggaactcactc 171
|||||||||||||| |||||| || | ||||||| || |||||||| ||||| ||||||
Sbjct: 115 tggcttccggtgaagaccctcatgcaattcaagtgcgtttgcaaatcatggaaatcactc 174
Query: 172 atc 174
|||
Sbjct: 175 atc 177
>gnl|LJGI|TC73199 weakly similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (11%)
Length = 654
Score = 54.0 bits (27), Expect = 2e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 112 tggcttccggtgaaatccctcacgcgactcaagtgtgtctgcaaatcctggaactcactc 171
|||||||||||||| |||||| || | ||||||| || |||||||| ||||| ||||||
Sbjct: 85 tggcttccggtgaagaccctcatgcaattcaagtgcgtttgcaaatcatggaaatcactc 144
Query: 172 atc 174
|||
Sbjct: 145 atc 147