Miyakogusa Predicted Gene

Lj3g3v0337760.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0337760.1 Non Chatacterized Hit- tr|D8QUQ0|D8QUQ0_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,41.53,3e-19,seg,NULL; Tim17,Mitochondrial inner membrane
translocase subunit Tim17/Tim22/Tim23/peroxisomal prote,CUFF.40637.1
         (567 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75909 weakly similar to UniRef100_Q9ARG3 Cluster: Tra...  1110   0.0  
gnl|LJGI|BW629679 similar to UniRef100_Q9ARG3 Cluster: Transloca...   186   1e-46

>gnl|LJGI|TC75909 weakly similar to UniRef100_Q9ARG3 Cluster: Translocase of inner
           mitochondrial membrane TIM23; n=1; Arabidopsis
           thaliana|Rep: Translocase of inner mitochondrial
           membrane TIM23 - Arabidopsis thaliana (Mouse-ear cress),
           partial (81%)
          Length = 749

 Score = 1110 bits (560), Expect = 0.0
 Identities = 563/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcgtaccagaccccagatcacgaatcaaactccgattccaacaccccaacccgcctctac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcgtaccagaccccagatcacgaatcaaactccgattccaacaccccaacccgcctctac 60

                                                                       
Query: 64  aacccctacaaggatctcgaggtccccattcgaaacctctaccagctcccaacctcccct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacccctacaaggatctcgaggtccccattcgaaacctctaccagctcccaacctcccct 120

                                                                       
Query: 124 gagtacctcttcgtcgaggaagctcgccggaagcgtcgctcatggggcgagaatctcacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagtacctcttcgtcgaggaagctcgccggaagcgtcgctcatggggcgagaatctcacc 180

                                                                       
Query: 184 ttctacaccggctgcggttacctcgccggcgctgttggcggcgccggcgttggattcgtt 243
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ttctacaccggctgcggttacctcgccggcgctgttggcggcgccggcgtcggattcgtt 240

                                                                       
Query: 244 gaaggcgtaaaatcgttcgagactggggattccgtcaagctccgggttaatagaattctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaggcgtaaaatcgttcgagactggggattccgtcaagctccgggttaatagaattctc 300

                                                                       
Query: 304 aactcgtctggccatgcgggtcggtcgtgggggaaccggttgggcgtgatcggtttgctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactcgtctggccatgcgggtcggtcgtgggggaaccggttgggcgtgatcggtttgctt 360

                                                                       
Query: 364 tatgctgggattgagagcgggattgaggctgcgagagataccgatgatgtgtggaatagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatgctgggattgagagcgggattgaggctgcgagagataccgatgatgtgtggaatagt 420

                                                                       
Query: 424 gtcgctgcggggcttggtaccggcgcgttgtatcgggcggcgagaggggtgagatcggct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgctgcggggcttggtaccggcgcgttgtatcgggcggcgagaggggtgagatcggct 480

                                                                       
Query: 484 gctgtcgcgggtgctgttggcggagttgtggttggagtggcggtcacggcgaagcaggcg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctgtcgcgggtgctgttggcggagttgtggttggagtggcggtcacggcgaagcaggcg 540

                                   
Query: 544 ttgaaacgttatgtgccgatatga 567
           ||||||||||||||||||||||||
Sbjct: 541 ttgaaacgttatgtgccgatatga 564


>gnl|LJGI|BW629679 similar to UniRef100_Q9ARG3 Cluster: Translocase of inner
           mitochondrial membrane TIM23; n=1; Arabidopsis
           thaliana|Rep: Translocase of inner mitochondrial
           membrane TIM23 - Arabidopsis thaliana (Mouse-ear cress),
           partial (51%)
          Length = 461

 Score =  186 bits (94), Expect = 1e-46
 Identities = 169/194 (87%)
 Strand = Plus / Plus

                                                                       
Query: 19  gatcacgaatcaaactccgattccaacaccccaacccgcctctacaacccctacaaggat 78
           ||||||||| ||| ||||||  |||||  || |||||| | |||||||||||||||||| 
Sbjct: 83  gatcacgaaccaacctccgaacccaacctccaaacccgaccctacaacccctacaaggac 142

                                                                       
Query: 79  ctcgaggtccccattcgaaacctctaccagctcccaacctcccctgagtacctcttcgtc 138
           ||||| ||||| || |||||||||||||| ||||| |||||||| ||||  |||||||||
Sbjct: 143 ctcgacgtcccaatccgaaacctctaccacctccctacctccccggagtttctcttcgtc 202

                                                                       
Query: 139 gaggaagctcgccggaagcgtcgctcatggggcgagaatctcaccttctacaccggctgc 198
           |||||||||||||| || || || || ||||||||||||||||||||||||||||| |||
Sbjct: 203 gaggaagctcgccgcaaacgccgatcctggggcgagaatctcaccttctacaccggatgc 262

                         
Query: 199 ggttacctcgccgg 212
           || |||||||||||
Sbjct: 263 ggctacctcgccgg 276