Miyakogusa Predicted Gene
- Lj3g3v0306870.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0306870.1 tr|A2Q465|A2Q465_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_040s0046
PE,95.36,0,DEAD_ATP_HELICASE,RNA helicase, ATP-dependent, DEAD-box,
conserved site; DEAD-like helicases
superfa,NODE_25139_length_1789_cov_141.628845.path2.1
(1296 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82337 homologue to UniRef100_A2Q465 Cluster: Helicase... 837 0.0
gnl|LJGI|TC80913 homologue to UniRef100_A2Q465 Cluster: Helicase... 823 0.0
gnl|LJGI|TC69978 homologue to UniRef100_A7PCT3 Cluster: Chromoso... 86 6e-16
>gnl|LJGI|TC82337 homologue to UniRef100_A2Q465 Cluster: Helicase, C-terminal; n=1;
Medicago truncatula|Rep: Helicase, C-terminal - Medicago
truncatula (Barrel medic), partial (28%)
Length = 676
Score = 837 bits (422), Expect = 0.0
Identities = 436/438 (99%), Gaps = 2/438 (0%)
Strand = Plus / Plus
Query: 861 gattactaggcagcttcgtatggacggttggcctgcactttcaattcatggagataaaag 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattactaggcagcttcgtatggacggttggcctgcactttcaattcatggagataaaag 60
Query: 921 tcaagcagaaagagactgggtgctctcggagtttaaatctggaaagagtcctataatgac 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaagcagaaagagactgggtgctctcggagtttaaatctggaaagagtcctataatgac 120
Query: 981 ggcgacagatgttgcagctcgcggattagatgtgaaggatgtaaagtatgtgataaatta 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggcgacagatgttgcagctcgcggattagatgtgaaggatgtaaagtatgtgataaatta 180
Query: 1041 tgacttcccgggatcacttgaggattatgttcatcgcattggtcggactgggagagctgg 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacttcccgggatcacttgaggattatgttcatcgcattggtcggactgggagagctgg 240
Query: 1101 tgcaaaaggaactgcg-tacacattcttcacagctgctaatgccagatttgcaaaggaac 1159
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcaaaaggaactgcgttacacattcttcacagctgctaatgccagatttgcaaaggaac 300
Query: 1160 ttataactatactcgaggaagctggacagagagtgagccctgacttggcagcaatgggac 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttataactatactcgaggaagctggacagagagtgagccctgacttggcagcaatgggac 360
Query: 1220 gaggtgcacctcctccaccctcaggaggattccgagatcgtgggaagggttatggcagtg 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggtgcacctcctccaccctcaggaggattccgagatcgtgggaagggttatggcagtg 420
Query: 1280 gtcg-cccatggagctga 1296
|||| |||||||||||||
Sbjct: 421 gtcgacccatggagctga 438
>gnl|LJGI|TC80913 homologue to UniRef100_A2Q465 Cluster: Helicase, C-terminal; n=1;
Medicago truncatula|Rep: Helicase, C-terminal - Medicago
truncatula (Barrel medic), partial (38%)
Length = 756
Score = 823 bits (415), Expect = 0.0
Identities = 415/415 (100%)
Strand = Plus / Plus
Query: 1 atgactgaagcagaggttgatgagtatcgcctgcgacgggaaatcacagttgaaggccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgactgaagcagaggttgatgagtatcgcctgcgacgggaaatcacagttgaaggccga 401
Query: 61 gatgttcccaaacccgtcaagacatttaacgatgtcggttttccagagtatgtgttggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gatgttcccaaacccgtcaagacatttaacgatgtcggttttccagagtatgtgttggaa 461
Query: 121 gaagttaagaaagctggctttgttgaacctacacccattcagtcacaaggttggccaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaagttaagaaagctggctttgttgaacctacacccattcagtcacaaggttggccaatg 521
Query: 181 gctttgaaggggcgtgatctgataggaattgcagaaaccggttcagggaagacacttgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gctttgaaggggcgtgatctgataggaattgcagaaaccggttcagggaagacacttgcg 581
Query: 241 tacttgttgcctgctattgtgcatgttaatgcgcagccaattctagaccctggcgatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tacttgttgcctgctattgtgcatgttaatgcgcagccaattctagaccctggcgatgga 641
Query: 301 cctattgtgttagtattggccccaacacgtgaacttgctgtccaaatacaacaagagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cctattgtgttagtattggccccaacacgtgaacttgctgtccaaatacaacaagagtgt 701
Query: 361 actaagtttggtgcatcgtcaaggattaagagtacgtgcatatatggtggggttc 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 actaagtttggtgcatcgtcaaggattaagagtacgtgcatatatggtggggttc 756
>gnl|LJGI|TC69978 homologue to UniRef100_A7PCT3 Cluster: Chromosome chr17
scaffold_12, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (59%)
Length = 1175
Score = 85.7 bits (43), Expect = 6e-16
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 538 ttggatgaagctgataggatgttggacatggggtttgatcctcagatacggaagattgtc 597
||||||||||||||| | |||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 56 ttggatgaagctgatcgaatgttggacatgggttttgaacctcagatacggaaaattgtt 115
Query: 598 tcacagattcgtcctgaccgtcaaactctgtactggagtgctacctggccaaaggaggtt 657
|||||||| || || | || || || |||||||| ||||| ||||||| |||||||
Sbjct: 116 agccagattcgaccagataggcagacactatactggagcgctacatggccaagggaggtt 175
Query: 658 gaa 660
|||
Sbjct: 176 gaa 178