Miyakogusa Predicted Gene

Lj3g3v0300640.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0300640.1 tr|B9N6J8|B9N6J8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1116851 PE=4
SV=1,31.95,1e-18,seg,NULL; no description,Plant lipid transfer
protein/hydrophobic protein helical domain; Bifunction,CUFF.40465.1
         (561 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62908 weakly similar to UniRef100_A7QR85 Cluster: Non...   111   5e-24

>gnl|LJGI|TC62908 weakly similar to UniRef100_A7QR85 Cluster: Non-specific
           lipid-transfer protein; n=1; Vitis vinifera|Rep:
           Non-specific lipid-transfer protein - Vitis vinifera
           (Grape), partial (65%)
          Length = 936

 Score =  111 bits (56), Expect = 5e-24
 Identities = 110/128 (85%)
 Strand = Plus / Plus

                                                                       
Query: 25  atgaatctagcactctcctctaccttgctactgctccttttggttggttttgcaagctca 84
           |||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||
Sbjct: 140 atgaatctagcactctcctctacctttcttcttgtccttttggttggttttgcaagctca 199

                                                                       
Query: 85  aacctaaaccaagacacagcagaatgctacaacaaactcattggtataacatattgcctt 144
            || || | ||||||| |||||| |||  |||||| ||||||| | || |  ||||||||
Sbjct: 200 gacatagagcaagacaaagcagagtgcaccaacaagctcattgctctagctaattgcctt 259

                   
Query: 145 ccctatgt 152
           ||||||||
Sbjct: 260 ccctatgt 267



 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 99/116 (85%)
 Strand = Plus / Plus

                                                                       
Query: 270 tgctctcaagttacaaggtgcttgtaaaacacccgtaaactttactcagtgtgttgatgt 329
           |||||||||||||| ||||| ||||||| ||||    ||  | ||||||||||||||| |
Sbjct: 406 tgctctcaagttaccaggtgtttgtaaatcaccaaccaatataactcagtgtgttgatat 465

                                                                   
Query: 330 tttgcaattggcacctaaatctcgagaagctaaagtatttgagggatatgacaaag 385
           ||||||  |||||||||| |||  |||||||||| |||||||||||||||||||||
Sbjct: 466 tttgcatctggcacctaagtctaaagaagctaaattatttgagggatatgacaaag 521



 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 446 atgctggcaatggaacaagcacaagcactcaagataagaac 486
           ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 579 atgctagcaatggaacaagcacaagcactaaagataagaac 619