Miyakogusa Predicted Gene
- Lj3g3v0290230.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0290230.1 tr|G7IHX8|G7IHX8_MEDTR DNA repair protein
radA-like protein OS=Medicago truncatula GN=MTR_2g100640
P,62.29,0,seg,NULL; no description,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; sms: DNA repair prot,CUFF.40443.1
(1770 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS318900 weakly similar to UniRef100_Q9FK38 Cluster: DN... 1082 0.0
gnl|LJGI|TC82763 similar to UniRef100_A7P707 Cluster: Chromosome... 329 3e-89
gnl|LJGI|TC69818 similar to UniRef100_A7P709 Cluster: Chromosome... 305 5e-82
gnl|LJGI|TC73159 similar to UniRef100_A7P4F6 Cluster: Chromosome... 94 4e-18
>gnl|LJGI|FS318900 weakly similar to UniRef100_Q9FK38 Cluster: DNA repair
protein-like; n=1; Arabidopsis thaliana|Rep: DNA repair
protein-like - Arabidopsis thaliana (Mouse-ear cress),
partial (8%)
Length = 727
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 1 atgagactcctcagaaccatcttcatccaacacaagcaccacctcctccaccccaaacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atgagactcctcagaaccatcttcatccaacacaagcaccacctcctccaccccaaacgc 241
Query: 61 tgcatttcatctctcttttcccaccccttttcttcaaccagcgacgccgacaataagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgcatttcatctctcttttcccaccccttttcttcaaccagcgacgccgacaataagggc 301
Query: 121 accggttggagcagttacggcggcatttttgaccccccagttgcgcagcaaagaccaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 accggttggagcagttacggcggcatttttgaccccccagttgcgcagcaaagaccaaat 361
Query: 181 gatcacagtgacgccaaagttggaaagccaaccccaagtgatcacagtgacactgaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gatcacagtgacgccaaagttggaaagccaaccccaagtgatcacagtgacactgaagta 421
Query: 241 gaagacattccgcgggagaatccaaccccaactgggagggtgaagaaggtgcagggtgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaagacattccgcgggagaatccaaccccaactgggagggtgaagaaggtgcagggtgga 481
Query: 301 ggaggagtggggaggaaatctgggaaggtgaaaactcagtgggtttgtattaactgtggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggaggagtggggaggaaatctgggaaggtgaaaactcagtgggtttgtattaactgtggc 541
Query: 361 catgaagcagggcaatggtgggggacttgcgcctcgtgcgacatggttggcactatgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 catgaagcagggcaatggtgggggacttgcgcctcgtgcgacatggttggcactatgaaa 601
Query: 421 gtgtttcatgagcccaagttaggtgatgctgatgacaaggctagaaattggttagctgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtgtttcatgagcccaagttaggtgatgctgatgacaaggctagaaattggttagctgat 661
Query: 481 gttgtgggctcgtggctcccgcagagaccggatcagttgcggcccatgaaattaggcgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gttgtgggctcgtggctcccgcagagaccggatcagttgcggcccatgaaattaggcgag 721
Query: 541 gttaac 546
||||||
Sbjct: 722 gttaac 727
>gnl|LJGI|TC82763 similar to UniRef100_A7P707 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (46%)
Length = 1043
Score = 329 bits (166), Expect = 3e-89
Identities = 390/465 (83%), Gaps = 6/465 (1%)
Strand = Plus / Plus
Query: 566 attggagaattcctttgtctggtccttttggagatgaagtttccagagtgcttggtggtg 625
|||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 579 attggagaattcctctgactggtccttttggaaatgaagtttctagagtgcttggtggtg 638
Query: 626 gtcttgtaccaggctctttgactttagttagcggtgatcctggtgttgggaagagtacat 685
|||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 639 gtcttgtaccaggctcattgactctagttggtggtgatcctggtgttgggaagagtactc 698
Query: 686 tgttgttgcaggtggcagcaatgatagcagatgggcacaagggtggtgaagcttctccag 745
||||||||||| | || || || || ||||| ||| |||| | ||||| ||| |||||||
Sbjct: 699 tgttgttgcagattgctgcgataattgcagaagggaacaatgatggtggagcatctccag 758
Query: 746 ttgtatatgtctctggtgaagagagccttcagcaaattggccacagagcagatc------ 799
|||| ||||||||||||||||||||| || |||||||||| | ||||||||||
Sbjct: 759 ttgtgtatgtctctggtgaagagagcgttgagcaaattggtaatagagcagatcgccttt 818
Query: 800 gccttgggattaaatctgatatttatttatattccagtactgatattgaggatctattga 859
||||||||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||
Sbjct: 819 gccttgggattggatcagatatttatttatattcaagtaatgatattgaggacatattga 878
Query: 860 agaaagcacagtctctttccccgcgtgctctggttgttgattcaatacaaactgtttatt 919
||| ||| ||| ||| ||||| | || || ||||||||||||||||||||||||||||
Sbjct: 879 agatagctcagcatctctcccctggggccctagttgttgattcaatacaaactgtttatt 938
Query: 920 cgaaagcaatagcagctagtgctggagggcctgtgcaggtgaaggagtgtacttgggctt 979
||||| |||| | ||| | |||||| | ||||||| ||||| ||||||| ||||
Sbjct: 939 tgaaaggaataatgggaagtccgggagggattatgcaggttaaggaatgtacttcagctt 998
Query: 980 tgatgcgatttgcaaaaacaacaaacatcccagttcttttgattg 1024
| |||||||||| || | || |||||||| |||||||||||||
Sbjct: 999 tattgcgatttgcgaagaagacgaacatcccggttcttttgattg 1043
>gnl|LJGI|TC69818 similar to UniRef100_A7P709 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (40%)
Length = 674
Score = 305 bits (154), Expect = 5e-82
Identities = 333/393 (84%), Gaps = 6/393 (1%)
Strand = Plus / Plus
Query: 1368 tgggatccaaacaaatagagctaatatgatcaaatgtgttcttataaagcaagcgggtct 1427
|||||||||| ||||||||||| ||||||||| || |||||||||||||||||| |||||
Sbjct: 120 tgggatccaagcaaatagagctgatatgatcatatctgttcttataaagcaagcaggtct 179
Query: 1428 ccatctccaagaaaatgttttgtttttaaatgttgttggtggaatgaaattggaagagag 1487
| |||||||||| ||| | ||||| | ||||||||| ||||| ||| |||
Sbjct: 180 tcgtctccaagaacatgctgtgtttctgaatgttgttagtggattgacgctggc------ 233
Query: 1488 tgagactgctggagatcttgcaatagcagctgcaatttgcagcagtttcttggagttccc 1547
||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct: 234 tgagactgcaggagatcttgcagtagcagctgcaatttgcagcagttgcttggagctccc 293
Query: 1548 tatgccaaaggacattgcgttcattggtgaaattggccttagtggagagcttcgcacggt 1607
||| ||||| ||||| || ||||| ||||||||||| ||| | || |||||||||| |||
Sbjct: 294 tattccaaacgacatcgcattcatcggtgaaattggtcttggcggtgagcttcgcatggt 353
Query: 1608 tcctagaattgagaaaaggatacacacagtggcaaagctgggttacagaatgtgtgtagt 1667
||||||||| || |||||||| ||||||||||||| ||||||||||||||||| | ||
Sbjct: 354 tcctagaatggaaaaaaggatgtacacagtggcaaaattgggttacagaatgtgtattgt 413
Query: 1668 gccgaagcaagttgaaaaagttttaggaactgtaggtatagaaaacatgcaagttgtatg 1727
|||||| || |||||||| || |||| ||| |||| ||||||||||| ||||||| |
Sbjct: 414 cccgaaggcagctgaaaaagcttcaggagctgaaggtttagaaaacatgaaagttgttgg 473
Query: 1728 ttgcaggaatctgaaagagtttattaacactgt 1760
|||||||||||||||||| |||||||||||||
Sbjct: 474 ttgcaggaatctgaaagacgttattaacactgt 506
>gnl|LJGI|TC73159 similar to UniRef100_A7P4F6 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (25%)
Length = 767
Score = 93.7 bits (47), Expect = 4e-18
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 1720 gttgtatgttgcaggaatctgaaagagtttattaacactgtgttcagatga 1770
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 767 gttgtatgttgcaggaatctgaaagagtttattaaccctgtgttcagatga 717