Miyakogusa Predicted Gene
- Lj3g3v0257290.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0257290.1 tr|Q2HU52|Q2HU52_MEDTR TRNA-binding arm; t-snare
OS=Medicago truncatula GN=MtrDRAFT_AC149489g2v2
PE=,80.7,0,TMF_TATA_bd,TATA element modulatory factor 1 TATA binding;
TMF_DNA_bd,TATA element modulatory factor,CUFF.40390.1
(2994 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69636 homologue to UniRef100_Q2HU52 Cluster: TRNA-bin... 1608 0.0
gnl|LJGI|AV408585 homologue to UniRef100_Q2HU52 Cluster: TRNA-bi... 852 0.0
gnl|LJGI|AW720181 homologue to UniRef100_Q2HU52 Cluster: TRNA-bi... 543 e-153
gnl|LJGI|TC77052 homologue to UniRef100_Q2HU52 Cluster: TRNA-bin... 309 5e-83
gnl|LJGI|BP074839 homologue to UniRef100_Q2HU52 Cluster: TRNA-bi... 307 2e-82
>gnl|LJGI|TC69636 homologue to UniRef100_Q2HU52 Cluster: TRNA-binding arm; t-snare;
n=1; Medicago truncatula|Rep: TRNA-binding arm; t-snare -
Medicago truncatula (Barrel medic), partial (27%)
Length = 1402
Score = 1608 bits (811), Expect = 0.0
Identities = 814/815 (99%)
Strand = Plus / Plus
Query: 2180 gtcttagggcggaacagacacaattaagtaggacccttgaaaaggagagacaaagggcag 2239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtcttagggcggaacagacacaattaagtaggacccttgaaaaggagagacaaagggcag 61
Query: 2240 ctgaaagtagacaggaatatcttgcagcaaaggaggaagcggacacacatgaaggtcgtg 2299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctgaaagtagacaggaatatcttgcagcaaaggaggaagcggacacacatgaaggtcgtg 121
Query: 2300 tgagacaacttgaggaggacattagagacttaaggcagaaacacaagcaagagttgcagg 2359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgagacaacttgaggaggacattagagacttaaggcagaaacacaagcaagagttgcagg 181
Query: 2360 aggtattgatgcacagggagcttcttcagcaggagatagaaaaagaaaaggctgctcgag 2419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aggtattgacgcacagggagcttcttcagcaggagatagaaaaagaaaaggctgctcgag 241
Query: 2420 cagatctggagaggactgcccgcgttcattctgcacaaactcccacaacaaagctaaact 2479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagatctggagaggactgcccgcgttcattctgcacaaactcccacaacaaagctaaact 301
Query: 2480 ctgcttttgaaaatggcaacctgtctcggaaagtctctagtgcaagctccctagggagct 2539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgcttttgaaaatggcaacctgtctcggaaagtctctagtgcaagctccctagggagct 361
Query: 2540 tggaagaaagccactttctgcaagcatcattggactcatctgacagttattctgagcgga 2599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tggaagaaagccactttctgcaagcatcattggactcatctgacagttattctgagcgga 421
Query: 2600 gagaattaagcatgagtccttactatatgaagagcatgacacccagttcatttgaagcag 2659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagaattaagcatgagtccttactatatgaagagcatgacacccagttcatttgaagcag 481
Query: 2660 cacttcgtcagaaagagggtgaacttgcttcatatatgtcacgcttggcatcactagaat 2719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacttcgtcagaaagagggtgaacttgcttcatatatgtcacgcttggcatcactagaat 541
Query: 2720 ctattcgtgattcccttgctgatgagttggtcaaattgacagcacagtgtgaaaagttgc 2779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctattcgtgattcccttgctgatgagttggtcaaattgacagcacagtgtgaaaagttgc 601
Query: 2780 gggctgaggctgctgtattacctggcttacgatcagagctagaagcactgaggaggaggc 2839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gggctgaggctgctgtattacctggcttacgatcagagctagaagcactgaggaggaggc 661
Query: 2840 attctgctgcattggaattgatgggtgaacgtgatgaagagctggaggaacttcgggcag 2899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 attctgctgcattggaattgatgggtgaacgtgatgaagagctggaggaacttcgggcag 721
Query: 2900 atattgtagatttgaaggaaatgtacagagaacaagtcaatttacttgtgaataagatcc 2959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atattgtagatttgaaggaaatgtacagagaacaagtcaatttacttgtgaataagatcc 781
Query: 2960 aggtaatgggttcgtcaatgggcaatgtctaattt 2994
|||||||||||||||||||||||||||||||||||
Sbjct: 782 aggtaatgggttcgtcaatgggcaatgtctaattt 816
>gnl|LJGI|AV408585 homologue to UniRef100_Q2HU52 Cluster: TRNA-binding arm; t-snare;
n=1; Medicago truncatula|Rep: TRNA-binding arm; t-snare -
Medicago truncatula (Barrel medic), partial (14%)
Length = 430
Score = 852 bits (430), Expect = 0.0
Identities = 430/430 (100%)
Strand = Plus / Plus
Query: 1425 cttgaaggaaaaggatgaaataattaatcaagttatggcagaaggcgaggagctttccaa 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgaaggaaaaggatgaaataattaatcaagttatggcagaaggcgaggagctttccaa 60
Query: 1485 aaagcaggctgctcaagaatctacaattaggaaactaagggctcagattagagattttga 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagcaggctgctcaagaatctacaattaggaaactaagggctcagattagagattttga 120
Query: 1545 ggaggagaagaagggtttgactactaaacttcagatagaggagaataaagtagaaagtat 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaggagaagaagggtttgactactaaacttcagatagaggagaataaagtagaaagtat 180
Query: 1605 caagagggacaagacagctacagagaagttgttgcaagaaacaatagaaaaacatcaaaa 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagagggacaagacagctacagagaagttgttgcaagaaacaatagaaaaacatcaaaa 240
Query: 1665 tgaacttgcagcacaaaaagaatattataccaatgctttggctgctgctaaggaggctga 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaacttgcagcacaaaaagaatattataccaatgctttggctgctgctaaggaggctga 300
Query: 1725 agcattagcagaggctcgtgccaacaatgaagcaagaactgagctagagagtcgtctaag 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcattagcagaggctcgtgccaacaatgaagcaagaactgagctagagagtcgtctaag 360
Query: 1785 ggaagctgaagaacgcgaatctatgcttgtccagacactcgaagaattgaggcaaacatt 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagctgaagaacgcgaatctatgcttgtccagacactcgaagaattgaggcaaacatt 420
Query: 1845 aagtagaaag 1854
||||||||||
Sbjct: 421 aagtagaaag 430
>gnl|LJGI|AW720181 homologue to UniRef100_Q2HU52 Cluster: TRNA-binding arm; t-snare;
n=1; Medicago truncatula|Rep: TRNA-binding arm; t-snare -
Medicago truncatula (Barrel medic), partial (9%)
Length = 277
Score = 543 bits (274), Expect = e-153
Identities = 276/277 (99%)
Strand = Plus / Plus
Query: 1140 ggacagggtgaagagggatatgaaaatgatggaggctgctctacaaggtgctgcaagaca 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggacagggtgaagagggatatgaaaatgatggaggctgctctacaaggtgctgcaagaca 60
Query: 1200 agctcaggccaaagctgatgagattgcaaaattgatgaatgaaaatgaacaattgaaagc 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctcaggccaaagctgatgagattgcaaaattgatgaatgaaaatgaacaattgaaagc 120
Query: 1260 tttgattgaggatctcaagagaaaatccaatgaggcagaagtcgagtctttgcgagagga 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgattgaggatctcaagagaaaatccaatgaggcagaagtcgagtctttgcgagagga 180
Query: 1320 ataccatcaaagggttaccactctcgagagaaggatttatgctctcactaaggaaaggga 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataccatcaaagggttaccactctcgagagaaggatttatgctctcactaaggaaaggga 240
Query: 1380 tactctacgccgagagcagaataagaaaagtgatgca 1416
|||||||||||| ||||||||||||||||||||||||
Sbjct: 241 tactctacgccgngagcagaataagaaaagtgatgca 277
>gnl|LJGI|TC77052 homologue to UniRef100_Q2HU52 Cluster: TRNA-binding arm; t-snare;
n=1; Medicago truncatula|Rep: TRNA-binding arm; t-snare
- Medicago truncatula (Barrel medic), partial (4%)
Length = 448
Score = 309 bits (156), Expect = 5e-83
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 1 atggcgtggtttaataatgcgaagacttcatgggggaacttccctgatttggcgggagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 atggcgtggtttaataatgcgaagacttcatgggggaacttccctgatttggcgggagct 97
Query: 61 gtgaataagcttcaggagagtgttaagagtatcgagaagaatttcgatactgctctcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gtgaataagcttcaggagagtgttaagagtatcgagaagaatttcgatactgctctcggc 37
Query: 121 ttcgaagagaagtctgaatccagcaatgatggtggc 156
||||||||||||||||||||||||||||||||||||
Sbjct: 36 ttcgaagagaagtctgaatccagcaatgatggtggc 1
>gnl|LJGI|BP074839 homologue to UniRef100_Q2HU52 Cluster: TRNA-binding arm; t-snare;
n=1; Medicago truncatula|Rep: TRNA-binding arm; t-snare -
Medicago truncatula (Barrel medic), partial (5%)
Length = 512
Score = 307 bits (155), Expect = 2e-82
Identities = 192/199 (96%), Gaps = 4/199 (2%)
Strand = Plus / Minus
Query: 2800 cctggcttacgatcagagctagaagcactgaggaggaggcattctgctgcattggaattg 2859
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 512 cctggcttacgatcagagctagaagcactgaggaggaggcattctcctgcattggaattg 453
Query: 2860 atgggtgaacgtgatgaagagctggaggaacttcgggcagatattgtagatttgaaggaa 2919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atgggtgaacgtgatgaagagctggaggaacttcgggcagatattgtagatttgaaggaa 393
Query: 2920 atgtacagagaa-caagt-caattta-cttgtgaataagatccaggtaa-tgggttcgtc 2975
|||||||||||| ||||| || |||| |||||||||||||||||||||| ||||||||||
Sbjct: 392 atgtacagagaaccaagtccactttaccttgtgaataagatccaggtaactgggttcgtc 333
Query: 2976 aatgggcaatgtctaattt 2994
||||||||||||||||||
Sbjct: 332 catgggcaatgtctaattt 314