Miyakogusa Predicted Gene

Lj3g3v0247260.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0247260.1 Non Chatacterized Hit- tr|D8QWI2|D8QWI2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,54.79,0.000000000000001,Ribosomal_S17,Ribosomal protein
S17; no description,Nucleic acid-binding, OB-fold; Nucleic
acid-bind,CUFF.40389.1
         (463 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63211 similar to UniRef100_P17092 Cluster: 30S riboso...   678   0.0  

>gnl|LJGI|TC63211 similar to UniRef100_P17092 Cluster: 30S ribosomal protein S17,
           chloroplast precursor; n=1; Pisum sativum|Rep: 30S
           ribosomal protein S17, chloroplast precursor - Pisum
           sativum (Garden pea), partial (61%)
          Length = 833

 Score =  678 bits (342), Expect = 0.0
 Identities = 353/356 (99%), Gaps = 3/356 (0%)
 Strand = Plus / Plus

                                                                       
Query: 111 gccgtcgttcctcccgtcgatcaaggccatgaaatccatccaagggaaggtggtgtgctc 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gccgtcgttcctcccgtcgatcaaggccatgaaatccatccaagggaaggtggtgtgctc 299

                                                                       
Query: 171 cgccagcgacaagaccgtcgcggtggaggttgttcgtctggcgccgcaccccaagtacaa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cgccagcgacaagaccgtcgcggtggaggttgttcgtctggcgccgcaccccaagtacaa 359

                                                                       
Query: 231 gaggcgtgtcaggaagaagaagaagtaccaggctcatgaccctgagaatcagttcaaggt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaggcgtgtcaggaagaagaagaagtaccaggctcatgaccctgagaatcagttcaaggt 419

                                                                       
Query: 291 cggtgacattgttcagctgaccaagaccagacccatcagcaaaaccaaggcctttctcgc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cggtgacattgttcagctgaccaagaccagacccatcagcaaaaccaaggcctttctcgc 479

                                                                       
Query: 351 tcttcctgttcctagtaggggtgccaagaacaaaccttccggtgatcttccgattccgtt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcttcctgttcctagtaggggtgccaagaacaaaccttccggtgatcttccgattccgtt 539

                                                                   
Query: 411 ggagtctgagcaggagccgcagcagcagc---aggaggaggagggccaggcttagg 463
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 540 ggagtctgagcaggagccgcagcagcagcaggaggaggaggagggccaggcttagg 595



 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   atgtggcttctgcaactccctcccaagctttccaaccccttcatccatgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atgtggcttctgcaactccctcccaagctttccaaccccttcatccatgg 179