Miyakogusa Predicted Gene

Lj3g3v0237250.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0237250.1 tr|F6LPV2|F6LPV2_MEDTR Rop guanine nucleotide
exchange factor OS=Medicago truncatula
GN=MTR_2g101830,82.1,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL; PRONE,Plant specific
Ro,CUFF.40384.1
         (1623 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP031215 similar to UniRef100_A7PEN0 Cluster: Chromosom...   462   e-129
gnl|LJGI|GO012525 similar to UniRef100_A7PNW1 Cluster: Chromosom...    54   3e-06

>gnl|LJGI|BP031215 similar to UniRef100_A7PEN0 Cluster: Chromosome chr11 scaffold_13,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr11 scaffold_13, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (5%)
          Length = 449

 Score =  462 bits (233), Expect = e-129
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1388 acaaggttggtgcagatcaaacgcctggttcaatgactctatcagatttcatgggttggg 1447
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449  acaagnttggtgcagatcaaacgcctggttcaatgactctatcagatttcatgggttggg 390

                                                                        
Query: 1448 gctctgatcaagctgactcagaggtgaagaaagaccccttcgcagcttcagatgattttt 1507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389  gctctgatcaagctgactcagaggtgaagaaagaccccttcgcagcttcagatgattttt 330

                                                                        
Query: 1508 acaataatgttgatatgaagcaaccacaaaaacttccagaagtagtgaccaccaagaaag 1567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329  acaataatgttgatatgaagcaaccacaaaaacttccagaagtagtgaccaccaagaaag 270

                                                                    
Query: 1568 tgtcataccttgagacattgggtgtgatgagaagtcccacatcgcgccattgaaga 1623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269  tgtcataccttgagacattgggtgtgatgagaagtcccacatcgcgccattgaaga 214


>gnl|LJGI|GO012525 similar to UniRef100_A7PNW1 Cluster: Chromosome chr8 scaffold_23,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr8 scaffold_23, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (27%)
          Length = 620

 Score = 54.0 bits (27), Expect = 3e-06
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1180 ttggatataagcaaaatccaattcaacaaggatgtggggcaagcagttcttgagagctat 1239
            ||||| || ||||||||||||| |||||||||||| ||| || |  |||| ||||| || 
Sbjct: 217  ttggacatgagcaaaatccaatgcaacaaggatgtagggaaatccattctagagagttac 276

                                   
Query: 1240 tcaagaatattggaaagtttggc 1262
            |||||| || |||| ||||||||
Sbjct: 277  tcaagagtactggagagtttggc 299