Miyakogusa Predicted Gene
- Lj3g3v0139630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0139630.1 tr|B9HA14|B9HA14_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561855 PE=4
SV=1,25.4,0.0000003,WD40,WD40 repeat; WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; WD_REPE,CUFF.40326.1
(924 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW624490 weakly similar to UniRef100_Q8L828 Cluster: Co... 755 0.0
gnl|LJGI|TC75632 homologue to UniRef100_A7P7E9 Cluster: Chromoso... 62 7e-09
gnl|LJGI|TC59250 homologue to UniRef100_A7P7E9 Cluster: Chromoso... 60 3e-08
>gnl|LJGI|BW624490 weakly similar to UniRef100_Q8L828 Cluster: Coatomer subunit
beta'-3; n=1; Arabidopsis thaliana|Rep: Coatomer subunit
beta'-3 - Arabidopsis thaliana (Mouse-ear cress),
partial (14%)
Length = 484
Score = 755 bits (381), Expect = 0.0
Identities = 381/381 (100%)
Strand = Plus / Plus
Query: 1 atggaacagtctctctcccttgaaattgagcatgaatttgttcaaaactccgaaagagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atggaacagtctctctcccttgaaattgagcatgaatttgttcaaaactccgaaagagtg 163
Query: 61 aaatctgtggagctgcacccaactgagccatgggttcttctggggttgtattcaggaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaatctgtggagctgcacccaactgagccatgggttcttctggggttgtattcaggaact 223
Query: 121 atttctatttggaactatcggacgaagaaagaagagaagtctttcaaagtcagtgaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atttctatttggaactatcggacgaagaaagaagagaagtctttcaaagtcagtgaatgt 283
Query: 181 ccagttagatcagcaaagttcattgttcgcgaaaattgggttatcgcagcaactgatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccagttagatcagcaaagttcattgttcgcgaaaattgggttatcgcagcaactgatgac 343
Query: 241 aaatatattcgagtctacaattatgacaaaatggagaaggtagtagaatttgagggacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaatatattcgagtctacaattatgacaaaatggagaaggtagtagaatttgagggacac 403
Query: 301 aaagattacattaggagcttggctgttcatccttccctgccatatgtggtgtccgcttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaagattacattaggagcttggctgttcatccttccctgccatatgtggtgtccgcttct 463
Query: 361 gatgatcacgttctaaagttg 381
|||||||||||||||||||||
Sbjct: 464 gatgatcacgttctaaagttg 484
>gnl|LJGI|TC75632 homologue to UniRef100_A7P7E9 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 1199
Score = 61.9 bits (31), Expect = 7e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 618 tggttctgatgattacactgccaaggtatgggattatca 656
||||||||||||| ||||||| |||||||||||||||||
Sbjct: 781 tggttctgatgatcacactgcaaaggtatgggattatca 819
>gnl|LJGI|TC59250 homologue to UniRef100_A7P7E9 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 787
Score = 60.0 bits (30), Expect = 3e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 618 tggttctgatgattacactgccaaggtatgggattatc 655
||||||||||||| | ||||||||||||||||||||||
Sbjct: 750 tggttctgatgatcaaactgccaaggtatgggattatc 787