Miyakogusa Predicted Gene

Lj3g3v0139580.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0139580.1 tr|B6VCL2|B6VCL2_TRIUA Expressed protein
(Fragment) OS=Triticum urartu PE=4 SV=1,39.2,3e-18,CASC3/Barentsz
eIF4AIII binding,Btz domain; Btz,Btz domain; seg,NULL;
coiled-coil,NULL,CUFF.40328.1
         (1710 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64956 similar to UniRef100_A7P7F4 Cluster: Chromosome...   222   6e-57
gnl|LJGI|BP066447 similar to UniRef100_A7P7F3 Cluster: Chromosom...   129   6e-29
gnl|LJGI|TC77008 homologue to UniRef100_A7P7F3 Cluster: Chromoso...    78   2e-13

>gnl|LJGI|TC64956 similar to UniRef100_A7P7F4 Cluster: Chromosome chr9 scaffold_7,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr9 scaffold_7, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (62%)
          Length = 1051

 Score =  222 bits (112), Expect = 6e-57
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1546 gcagtttcccaaggtaatggaagaggttctttcatttatggtggagctatgggcactcct 1605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2    gcagtttcccaaggtaatggaagaggttctttcatttatggtggagctatgggcactcct 61

                                                                
Query: 1606 ggaaatatgggtggtggtcgtggggatcagaacttcccaaccttcttgccag 1657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   ggaaatatgggtggtggtcgtggggatcagaacttcccaaccttcttgccag 113


>gnl|LJGI|BP066447 similar to UniRef100_A7P7F3 Cluster: Chromosome chr9 scaffold_7,
          whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
          Chromosome chr9 scaffold_7, whole genome shotgun
          sequence - Vitis vinifera (Grape), partial (5%)
          Length = 320

 Score =  129 bits (65), Expect = 6e-29
 Identities = 72/73 (98%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  atggctacaagcagtgcgggtgaggaagatgttgagtatgagagtgatcctgaggagctc 60
          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atggctacaagcagtgcgg-tgaggaagatgttgagtatgagagtgatcctgaggagctc 14

                       
Query: 61 aagagatcgctgt 73
          |||||||||||||
Sbjct: 13 aagagatcgctgt 1


>gnl|LJGI|TC77008 homologue to UniRef100_A7P7F3 Cluster: Chromosome chr9 scaffold_7,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr9 scaffold_7, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 620

 Score = 77.8 bits (39), Expect = 2e-13
 Identities = 77/89 (86%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                       
Query: 25  gaagatgttgagtatgagagtgatcctgaggagctcaagagatcgctgtcaatgcggcgg 84
           |||||||||||||| || |||||||| || |||   |||||||||||||||||   ||||
Sbjct: 190 gaagatgttgagtacgacagtgatccggaagaggcaaagagatcgctgtcaat---gcgg 246

                                        
Query: 85  aggcgtgaggcgagtgatgatgaggaagg 113
           ||||||||||| ||||||||||| |||||
Sbjct: 247 aggcgtgaggctagtgatgatgaagaagg 275