Miyakogusa Predicted Gene
- Lj3g3v0115940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0115940.1 Non Chatacterized Hit- tr|D8S5W6|D8S5W6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,44.74,2e-18,Q8LBW7_ARATH_Q8LBW7;,Cytochrome c oxidase, subunit
Vb; no description,Cytochrome c oxidase, subunit ,CUFF.40310.1
(459 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72086 similar to UniRef100_Q0KKQ3 Cluster: Cytochrome... 775 0.0
gnl|LJGI|GO010069 similar to UniRef100_Q0KKQ3 Cluster: Cytochrom... 759 0.0
gnl|LJGI|TC71186 homologue to UniRef100_Q0KKQ5 Cluster: Cytochro... 325 1e-88
gnl|LJGI|TC61651 homologue to UniRef100_Q0KKQ5 Cluster: Cytochro... 325 1e-88
gnl|LJGI|BW601355 similar to UniRef100_Q0KKQ3 Cluster: Cytochrom... 311 2e-84
gnl|LJGI|TC59146 homologue to UniRef100_Q0KKQ5 Cluster: Cytochro... 170 5e-42
gnl|LJGI|DC593585 similar to UniRef100_Q0KKQ5 Cluster: Cytochrom... 52 3e-06
>gnl|LJGI|TC72086 similar to UniRef100_Q0KKQ3 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (86%)
Length = 890
Score = 775 bits (391), Expect = 0.0
Identities = 391/391 (100%)
Strand = Plus / Plus
Query: 69 ccccggatccgccctccgattcgccgtcgccgcccgctacgtcgccacccaatcagctgg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ccccggatccgccctccgattcgccgtcgccgcccgctacgtcgccacccaatcagctgg 255
Query: 129 ttcgatcaagaagacggttgaggatgtcgtcccaatcgctactggccacgagcgtgagga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttcgatcaagaagacggttgaggatgtcgtcccaatcgctactggccacgagcgtgagga 315
Query: 189 gattcaagctgaccttgagggaagggatattcttgagataaaccatccagaaggtccttt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gattcaagctgaccttgagggaagggatattcttgagataaaccatccagaaggtccttt 375
Query: 249 cgggacaaaggaagcacctgctgttgttaggtcttactttgacagaaggatagttggatg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cgggacaaaggaagcacctgctgttgttaggtcttactttgacagaaggatagttggatg 435
Query: 309 cccaggtggcgaaggtgaggatgagcatgatgttgtctggttttggctggagaaaggcaa 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cccaggtggcgaaggtgaggatgagcatgatgttgtctggttttggctggagaaaggcaa 495
Query: 369 gcctcatgagtgtccagtgtgcgcacagtattttgtgcttgaagtggtgggacccggcgg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcctcatgagtgtccagtgtgcgcacagtattttgtgcttgaagtggtgggacccggcgg 555
Query: 429 tgatccttatggacatggcgatcaccattga 459
|||||||||||||||||||||||||||||||
Sbjct: 556 tgatccttatggacatggcgatcaccattga 586
>gnl|LJGI|GO010069 similar to UniRef100_Q0KKQ3 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (76%)
Length = 727
Score = 759 bits (383), Expect = 0.0
Identities = 383/383 (100%)
Strand = Plus / Plus
Query: 77 ccgccctccgattcgccgtcgccgcccgctacgtcgccacccaatcagctggttcgatca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccgccctccgattcgccgtcgccgcccgctacgtcgccacccaatcagctggttcgatca 277
Query: 137 agaagacggttgaggatgtcgtcccaatcgctactggccacgagcgtgaggagattcaag 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agaagacggttgaggatgtcgtcccaatcgctactggccacgagcgtgaggagattcaag 337
Query: 197 ctgaccttgagggaagggatattcttgagataaaccatccagaaggtcctttcgggacaa 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgaccttgagggaagggatattcttgagataaaccatccagaaggtcctttcgggacaa 397
Query: 257 aggaagcacctgctgttgttaggtcttactttgacagaaggatagttggatgcccaggtg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aggaagcacctgctgttgttaggtcttactttgacagaaggatagttggatgcccaggtg 457
Query: 317 gcgaaggtgaggatgagcatgatgttgtctggttttggctggagaaaggcaagcctcatg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gcgaaggtgaggatgagcatgatgttgtctggttttggctggagaaaggcaagcctcatg 517
Query: 377 agtgtccagtgtgcgcacagtattttgtgcttgaagtggtgggacccggcggtgatcctt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agtgtccagtgtgcgcacagtattttgtgcttgaagtggtgggacccggcggtgatcctt 577
Query: 437 atggacatggcgatcaccattga 459
|||||||||||||||||||||||
Sbjct: 578 atggacatggcgatcaccattga 600
>gnl|LJGI|TC71186 homologue to UniRef100_Q0KKQ5 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (74%)
Length = 640
Score = 325 bits (164), Expect = 1e-88
Identities = 236/260 (90%)
Strand = Plus / Plus
Query: 163 atcgctactggccacgagcgtgaggagattcaagctgaccttgagggaagggatattctt 222
||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |||
Sbjct: 273 atcgctactggtcacgagcgcgaggagcttcaagctaaccttgagggaagggatatcctt 332
Query: 223 gagataaaccatccagaaggtcctttcgggacaaaggaagcacctgctgttgttaggtct 282
|| ||||| ||||| | || ||||| || ||||||||||||||||||||||||| |||
Sbjct: 333 gaaataaatcatcctgttgggccttttggcacaaaggaagcacctgctgttgttaaatct 392
Query: 283 tactttgacagaaggatagttggatgcccaggtggcgaaggtgaggatgagcatgatgtt 342
|||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 393 tactatgataagaggatagttggatgcccaggtggtgaaggcgaggatgagcatgatgtt 452
Query: 343 gtctggttttggctggagaaaggcaagcctcatgagtgtccagtgtgcgcacagtatttt 402
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 453 gtctggttttggctggagaaaggcaagcctcatgaatgtcctgtgtgcgcacagtatttt 512
Query: 403 gtgcttgaagtggtgggacc 422
|||||||| |||||||||||
Sbjct: 513 gtgcttgaggtggtgggacc 532
>gnl|LJGI|TC61651 homologue to UniRef100_Q0KKQ5 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (74%)
Length = 801
Score = 325 bits (164), Expect = 1e-88
Identities = 236/260 (90%)
Strand = Plus / Plus
Query: 163 atcgctactggccacgagcgtgaggagattcaagctgaccttgagggaagggatattctt 222
||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |||
Sbjct: 218 atcgctactggtcacgagcgcgaggagcttcaagctaaccttgagggaagggatatcctt 277
Query: 223 gagataaaccatccagaaggtcctttcgggacaaaggaagcacctgctgttgttaggtct 282
|| ||||| ||||| | || ||||| || ||||||||||||||||||||||||| |||
Sbjct: 278 gaaataaatcatcctgttgggccttttggcacaaaggaagcacctgctgttgttaaatct 337
Query: 283 tactttgacagaaggatagttggatgcccaggtggcgaaggtgaggatgagcatgatgtt 342
|||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 338 tactatgataagaggatagttggatgcccaggtggtgaaggcgaggatgagcatgatgtt 397
Query: 343 gtctggttttggctggagaaaggcaagcctcatgagtgtccagtgtgcgcacagtatttt 402
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 398 gtctggttttggctggagaaaggcaagcctcatgaatgtcctgtgtgcgcacagtatttt 457
Query: 403 gtgcttgaagtggtgggacc 422
|||||||| |||||||||||
Sbjct: 458 gtgcttgaggtggtgggacc 477
>gnl|LJGI|BW601355 similar to UniRef100_Q0KKQ3 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (44%)
Length = 472
Score = 311 bits (157), Expect = 2e-84
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 122 cagctggttcgatcaagaagacggttgaggatgtcgtcccaatcgctactggccacgagc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagctggttcgatcaagaagacggttgaggatgtcgtcccaatcgctactggccacgagc 375
Query: 182 gtgaggagattcaagctgaccttgagggaagggatattcttgagataaaccatccagaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtgaggagattcaagctgaccttgagggaagggatattcttgagataaaccatccagaag 435
Query: 242 gtcctttcgggacaaaggaagcacctgctgttgttag 278
|||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtcctttcgggacaaaggaagcacctgctgttgttag 472
Score = 111 bits (56), Expect = 4e-24
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 69 ccccggatccgccctccgattcgccgtcgccgcccgctacgtcgccacccaatcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ccccggatccgccctccgattcgccgtcgccgcccgctacgtcgccacccaatcag 244
>gnl|LJGI|TC59146 homologue to UniRef100_Q0KKQ5 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (74%)
Length = 799
Score = 170 bits (86), Expect = 5e-42
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 325 gaggatgagcatgatgttgtctggttttggctggagaaaggcaagcctcatgagtgtcca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 448 gaggatgagcatgatgttgtctggttttggctggagaaaggcaagcctcatgaatgtcct 507
Query: 385 gtgtgcgcacagtattttgtgcttgaagtggtgggacc 422
|||||||||||||||||||||||||| |||||||||||
Sbjct: 508 gtgtgcgcacagtattttgtgcttgaggtggtgggacc 545
Score = 161 bits (81), Expect = 5e-39
Identities = 141/161 (87%)
Strand = Plus / Plus
Query: 163 atcgctactggccacgagcgtgaggagattcaagctgaccttgagggaagggatattctt 222
||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |||
Sbjct: 159 atcgctactggtcacgagcgcgaggagcttcaagctaaccttgagggaagggatatcctt 218
Query: 223 gagataaaccatccagaaggtcctttcgggacaaaggaagcacctgctgttgttaggtct 282
|| ||||| ||||| | || ||||| || ||||||||||||||||||||||||| |||
Sbjct: 219 gaaataaatcatcctgttgggccttttggcacaaaggaagcacctgctgttgttaaatct 278
Query: 283 tactttgacagaaggatagttggatgcccaggtggcgaagg 323
|||| ||| | ||||||||||||||||||||||| |||||
Sbjct: 279 tactatgataagaggatagttggatgcccaggtggtgaagg 319
>gnl|LJGI|DC593585 similar to UniRef100_Q0KKQ5 Cluster: Cytochrome c oxidase subunit
Vb; n=1; Pisum sativum|Rep: Cytochrome c oxidase subunit
Vb - Pisum sativum (Garden pea), partial (28%)
Length = 566
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 163 atcgctactggccacgagcgtgaggagattcaagctgaccttgagg 208
||||||||||| || ||||| |||||| |||||||| |||||||||
Sbjct: 141 atcgctactggtcaggagcgcgaggagcttcaagctaaccttgagg 186