Miyakogusa Predicted Gene
- Lj3g3v0075720.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0075720.1 tr|Q2HVW5|Q2HVW5_MEDTR Nucleoporin interacting
component; Protein prenyltransferase OS=Medicago
trun,91.73,0,SUBFAMILY NOT NAMED,NULL; NUCLEAR PORE COMPLEX PROTEIN
NUP93 (NUCLEOPORIN NUP93) (DEAD EYE PROTEIN),,CUFF.40306.1
(2571 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69614 homologue to UniRef100_Q2HVW5 Cluster: Nucleopo... 1415 0.0
gnl|LJGI|TC77889 homologue to UniRef100_Q2HVW5 Cluster: Nucleopo... 1403 0.0
gnl|LJGI|FS341902 similar to UniRef100_Q2HVW5 Cluster: Nucleopor... 375 e-103
gnl|LJGI|BP054504 similar to UniRef100_Q2HVW5 Cluster: Nucleopor... 210 3e-53
>gnl|LJGI|TC69614 homologue to UniRef100_Q2HVW5 Cluster: Nucleoporin interacting
component; Protein prenyltransferase; n=1; Medicago
truncatula|Rep: Nucleoporin interacting component;
Protein prenyltransferase - Medicago truncatula (Barrel
medic), partial (27%)
Length = 811
Score = 1415 bits (714), Expect = 0.0
Identities = 714/714 (100%)
Strand = Plus / Plus
Query: 1 atggcgaacgaagacttggccagttggtcagatcttctccattcttccacgaagcttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggcgaacgaagacttggccagttggtcagatcttctccattcttccacgaagcttctc 157
Query: 61 gaacaagccgcaccttctgctcagttccctcctctccagaggaacttagatcaactggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gaacaagccgcaccttctgctcagttccctcctctccagaggaacttagatcaactggaa 217
Query: 121 gcattgtctaagaagcttaaatccaaaactgtgagggctgaggcgccttctcaatctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gcattgtctaagaagcttaaatccaaaactgtgagggctgaggcgccttctcaatctatc 277
Query: 181 gctgcaaccagactgcttgctcgtgagggtataaatgctgagcagcttgcaagggatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gctgcaaccagactgcttgctcgtgagggtataaatgctgagcagcttgcaagggatctg 337
Query: 241 aagtcatttgaattgaagacaacttttgaggatgtttttcctgttgaggcaacaagcgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aagtcatttgaattgaagacaacttttgaggatgtttttcctgttgaggcaacaagcgtt 397
Query: 301 gaggagtatttgcagcaggttcatgaaatggcaatggtctctgctgtccaggaagctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaggagtatttgcagcaggttcatgaaatggcaatggtctctgctgtccaggaagctcag 457
Query: 361 aaggataatctcaggagtttcaatgattatatgatgaaagttttggaggaagattggcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaggataatctcaggagtttcaatgattatatgatgaaagttttggaggaagattggcat 517
Query: 421 aaagaaaagcgtgacttccttcagagtcttaaccgaatttcaacattacctcggacaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaagaaaagcgtgacttccttcagagtcttaaccgaatttcaacattacctcggacaaac 577
Query: 481 atggtaactaacagcaatgggggtacccgccaaggccagattgtgtccgtggcttccaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atggtaactaacagcaatgggggtacccgccaaggccagattgtgtccgtggcttccaat 637
Query: 541 gtacctagcatggaggttgttccttttactaccagacctattgcggagaaaaaggcatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtacctagcatggaggttgttccttttactaccagacctattgcggagaaaaaggcatct 697
Query: 601 gtctatgctgaagttgtgaaaaacctgaatagagcaaggcagtctgggctaccatttaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtctatgctgaagttgtgaaaaacctgaatagagcaaggcagtctgggctaccatttaaa 757
Query: 661 cctgctgcagctttcaagggtgcatatgaaagtttaaacattgatgctagtggt 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 cctgctgcagctttcaagggtgcatatgaaagtttaaacattgatgctagtggt 811
>gnl|LJGI|TC77889 homologue to UniRef100_Q2HVW5 Cluster: Nucleoporin interacting
component; Protein prenyltransferase; n=1; Medicago
truncatula|Rep: Nucleoporin interacting component;
Protein prenyltransferase - Medicago truncatula (Barrel
medic), partial (27%)
Length = 1113
Score = 1403 bits (708), Expect = 0.0
Identities = 711/712 (99%)
Strand = Plus / Plus
Query: 1860 gttactgttaagggatggaggcatatatcttttacttggtgcaagaggtgctggagaaga 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttactgttaagggatggaggcatatatcttttacttggtgcaagaggtgctggagaaga 60
Query: 1920 aggggaattgggacgttttgttactgatttcaaagcaagaaaacaatttttatatgaagc 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggggaattgggacgttttgttactgatttcaaagcaagaaaacaatttttatatgaagc 120
Query: 1980 tgcatgccaatgtcaggaggctgggatgtatgacaaatctatagaaattcagaagagagt 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 tgcatgccaatgtcaggaggctgggatgtatgacaaatctatagaaattcagaggagagt 180
Query: 2040 gggttccttctcaatggcgctggatactatcaataagtgcctctctgaagccatttgtgc 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggttccttctcaatggcgctggatactatcaataagtgcctctctgaagccatttgtgc 240
Query: 2100 ccttttccgtggaagattagacggtgagagccagactgctggcctcatccattctggcaa 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccttttccgtggaagattagacggtgagagccagactgctggcctcatccattctggcaa 300
Query: 2160 tgagattttggaagcatatccttactatccagatgtcagtcctcaagagagaatagatgt 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagattttggaagcatatccttactatccagatgtcagtcctcaagagagaatagatgt 360
Query: 2220 ttttgagcagcaagctgtgttaagagaactcgagtcaatattatcaattcacaaattgtc 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttgagcagcaagctgtgttaagagaactcgagtcaatattatcaattcacaaattgtc 420
Query: 2280 tagactggggcatcatgttgatgcattaagggaggttgcaaaacttccatttctccctct 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagactggggcatcatgttgatgcattaagggaggttgcaaaacttccatttctccctct 480
Query: 2340 agatccccggggccctgatgttgccattgatgtgtttgagaatttatctcctcatgtcca 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agatccccggggccctgatgttgccattgatgtgtttgagaatttatctcctcatgtcca 540
Query: 2400 agcttgtattccggatcttttgaaggttgctctcacttgtctggactatgtaacggactc 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agcttgtattccggatcttttgaaggttgctctcacttgtctggactatgtaacggactc 600
Query: 2460 tgatggatcacttcgcgccttaagggcaaagattgcgagttttattgcaaataaccttaa 2519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgatggatcacttcgcgccttaagggcaaagattgcgagttttattgcaaataaccttaa 660
Query: 2520 gaggaattggcctcgtgatttgtatgagagagttgcgcagaggttgtaaaag 2571
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaggaattggcctcgtgatttgtatgagagagttgcgcagaggttgtaaaag 712
>gnl|LJGI|FS341902 similar to UniRef100_Q2HVW5 Cluster: Nucleoporin interacting
component; Protein prenyltransferase; n=1; Medicago
truncatula|Rep: Nucleoporin interacting component;
Protein prenyltransferase - Medicago truncatula (Barrel
medic), partial (15%)
Length = 802
Score = 375 bits (189), Expect = e-103
Identities = 276/303 (91%), Gaps = 4/303 (1%)
Strand = Plus / Plus
Query: 1129 aatactggaggaatggtagcagaagagattgcagttgctgcatctgaagaatgtgaaaga 1188
||||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||||||
Sbjct: 474 aatacaggaggaatggtagcagaaaagattgcaggtgctgcatctgaggaatgtgaaaga 533
Query: 1189 atgttgagaactggtgatcgggtaggccgagctggatatgacaagaaaaagttactgctg 1248
|| |||||||||||| |||| ||||| |||| |||| ||||||||||||| |||| |
Sbjct: 534 atattgagaactggt-atcgagtaggtcgagttggaaatgacaagaaaaaaatacttata 592
Query: 1249 tttgccattatatcaggttctcgaaggcatatcgatcgcctgcttagagatcaaccaact 1308
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 593 tttgccattatatcaggttctcgaaggcatatcggtcgcctgcttagagatcaaccaact 652
Query: 1309 ctctttagtacaatagaggatttcttgtggttcaaattgtcagctgtgcgggattgccct 1368
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 653 ctctttagtacaatagaggatttcttgtggttcaaattgtcagctgtgtgggatttccct 712
Query: 1369 gggggatcttcgtctattgttctaag---tgatggtctgataccatacagtttggatgat 1425
|| |||||||| | |||||||||||| |||||||||||| | |||||||||||||| |
Sbjct: 713 ggtggatcttcatatattgttctaagtgatgatggtctgattcgatacagtttggatggt 772
Query: 1426 ttg 1428
|||
Sbjct: 773 ttg 775
Score = 137 bits (69), Expect = 4e-31
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1029 atatttttgcctgaggtctggttattatgatgaagcaagaaatgttgccctatcttctcg 1088
||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 141 atatttttgcctgaggtctggttattatgatgaaggaagaaatggtgccctgtcttctcg 200
Query: 1089 tgcttcacatcaatttgctcctctg 1113
||||||||||||||||||| |||||
Sbjct: 201 tgcttcacatcaatttgctactctg 225
Score = 65.9 bits (33), Expect = 1e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 278 ttcctgttgaggcaacaagcgttgaggagtatttgcagcag 318
||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 95 ttcctgttgaggcaacaagtgttgagtagtatttgcagcag 135
>gnl|LJGI|BP054504 similar to UniRef100_Q2HVW5 Cluster: Nucleoporin interacting
component; Protein prenyltransferase; n=1; Medicago
truncatula|Rep: Nucleoporin interacting component;
Protein prenyltransferase - Medicago truncatula (Barrel
medic), partial (5%)
Length = 524
Score = 210 bits (106), Expect = 3e-53
Identities = 159/176 (90%), Gaps = 8/176 (4%)
Strand = Plus / Minus
Query: 2323 cttccatttctccctctagatccccggggccctgatgttgccattgatgtgtt-----tg 2377
|||||||||||||||||||||||| | |||||| || ||||| |||||||||| ||
Sbjct: 405 cttccatttctccctctagatccctgaggcccttatattgccgttgatgtgttacgtttg 346
Query: 2378 agaatttatctcctcatgtccaagcttgtattccggatcttttgaaggttgctctcactt 2437
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agaagttatctcctcatgtccaagcttgtattccggatcttttgaaggttgctctcactt 286
Query: 2438 gtctggactatgtaacggact---ctgatggatcacttcgcgccttaagggcaaag 2490
||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||
Sbjct: 285 gtctggactatgtgacggactcagctgatggatcacttcacgccttgagggcaaag 230