Miyakogusa Predicted Gene
- Lj3g3v0075590.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0075590.2 Non Chatacterized Hit- tr|J3L103|J3L103_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,65.52,0.00000000000004,Pep_deformylase,Formylmethionine
deformylase; seg,NULL; PEPTIDE DEFORMYLASE,Formylmethionine
deformy,CUFF.40265.2
(831 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW605578 similar to UniRef100_Q2HVV7 Cluster: Formylmet... 763 0.0
gnl|LJGI|TC73896 similar to UniRef100_Q9FUZ0 Cluster: Peptide de... 214 7e-55
gnl|LJGI|AV428617 similar to UniRef100_Q9FUZ0 Cluster: Peptide d... 54 1e-06
>gnl|LJGI|BW605578 similar to UniRef100_Q2HVV7 Cluster: Formylmethionine deformylase;
n=1; Medicago truncatula|Rep: Formylmethionine
deformylase - Medicago truncatula (Barrel medic),
partial (26%)
Length = 487
Score = 763 bits (385), Expect = 0.0
Identities = 419/436 (96%)
Strand = Plus / Plus
Query: 1 atggcagcggtgcagcggctagcgtggcgtttccgcccggctccgccgctcatgttcgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atggcagcggtgcagcggctagcgtggcgtttccgcccggctccgccgctcatgttcgca 111
Query: 61 ctcgccaacggcgtcgcaacaccctcagcttgtagtagcagcaccagcaccgcagaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ctcgccaacggcgtcgcaacaccctcagcttgtagtagcagcaccagcaccgcagaatca 171
Query: 121 gcatcgagctcgaaacaatgcaggcccttcaactccacagcatcannnnnnnnnnnnnnn 180
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gcatcgagctcgaaacaatgcaggcccttcaactccacagcatcatcttcttcttcttct 231
Query: 181 nnatcatcaaaggcaggttggttttcgggtctgacattgccgaaggttgtgaaagctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcatcatcaaaggcaggttggttttcgggtctgacattgccgaaggttgtgaaagctgga 291
Query: 241 gatcccgttctgcaccagcctgcacgtgaagttgatcccagtgagatgaagtcggagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gatcccgttctgcaccagcctgcacgtgaagttgatcccagtgagatgaagtcggagaag 351
Query: 301 gtgcagaagatcatcgatgacatgatccgtgtcatgaggaatgcacctggtgttggtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtgcagaagatcatcgatgacatgatccgtgtcatgaggaatgcacctggtgttggtctc 411
Query: 361 gctgccccacaaattggacttcccttcaggataattgttttggaagataaaaaagaatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gctgccccacaaattggacttcccttcaggataattgttttggaagataaaaaagaatat 471
Query: 421 atgggttacgacacaa 436
||||||||||||||||
Sbjct: 472 atgggttacgacacaa 487
>gnl|LJGI|TC73896 similar to UniRef100_Q9FUZ0 Cluster: Peptide deformylase,
mitochondrial precursor; n=1; Solanum lycopersicum|Rep:
Peptide deformylase, mitochondrial precursor - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(69%)
Length = 691
Score = 214 bits (108), Expect = 7e-55
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 504 gccttttgatcttttggtgatcctgaatcctaaactagagaagaagagcaacaggactgc 563
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 281 gccttttgatcttttggtgatcctgaatcccaagctagagaagaagagcaacagaactgc 340
Query: 564 actgttttttgaagggtgcttgagtgtctcaggatatagtgctgtggtagagaggtacct 623
|| ||||||||||||||||||||||| |||| ||| || ||||| ||| | | ||
Sbjct: 341 cctattttttgaagggtgcttgagtgttgatggatttagagcagtggtggagcgacatct 400
Query: 624 tgacgttgaggttacaggttttgatcgcgatggtgaacccatcaaaataaaagcttcagg 683
||||||||| ||||||||||| |||||| | |||| || ||||||||||| || || ||
Sbjct: 401 tgacgttgaagttacaggtttagatcgctacggtgccccaatcaaaataaatgcgtcggg 460
Query: 684 ttggcaggcccggattttgcaacatgagtgtgatcacctagatggaacactgtatgttga 743
|||||| ||||||||||| ||||| |||||||||||| | ||||| || ||||||||||
Sbjct: 461 ttggcaagcccggattttacaacacgagtgtgatcacttggatggcactttgtatgttga 520
Query: 744 taagatgttacc 755
||||||| ||||
Sbjct: 521 taagatggtacc 532
Score = 141 bits (71), Expect = 8e-33
Identities = 134/155 (86%)
Strand = Plus / Plus
Query: 268 gaagttgatcccagtgagatgaagtcggagaaggtgcagaagatcatcgatgacatgatc 327
|||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 84 gaagttaatcccagtgagataaagtcggagagagtgcagaagatcattgatgacatgatc 143
Query: 328 cgtgtcatgaggaatgcacctggtgttggtctcgctgccccacaaattggacttcccttc 387
|| |||||||||||||| ||||| |||||| | ||||| || || |||||| |||| ||
Sbjct: 144 cgggtcatgaggaatgctcctggggttggtttagctgctccccagattggagttccttta 203
Query: 388 aggataattgttttggaagataaaaaagaatatat 422
|||||||| ||| ||||||||| ||||| |||||
Sbjct: 204 aggataatagttgtggaagataccaaagagtatat 238
>gnl|LJGI|AV428617 similar to UniRef100_Q9FUZ0 Cluster: Peptide deformylase,
mitochondrial precursor; n=1; Solanum lycopersicum|Rep:
Peptide deformylase, mitochondrial precursor - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(17%)
Length = 355
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 268 gaagttgatcccagtgagatgaagtcggagaaggtgcagaagatcat 314
|||||| ||||||||||||| |||||||||| ||||| ||||||||
Sbjct: 306 gaagttaatcccagtgagataaagtcggagagagtgcacaagatcat 352