Miyakogusa Predicted Gene
- Lj3g3v0044270.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0044270.1 Non Chatacterized Hit- tr|B9RV94|B9RV94_RICCO
Signal recognition particle 54 kD protein, putative
OS,87.3,0,SRP54,Signal recognition particle, SRP54 subunit, GTPase
domain; SRP54_euk: signal recognition parti,CUFF.40237.1
(1437 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72150 homologue to UniRef100_A7QIK3 Cluster: Chromoso... 1019 0.0
gnl|LJGI|TC80914 similar to UniRef100_A8MSA9 Cluster: Uncharacte... 535 e-151
gnl|LJGI|TC71661 homologue to UniRef100_P49972 Cluster: Signal r... 309 3e-83
gnl|LJGI|GO007107 homologue to UniRef100_P49971 Cluster: Signal ... 295 4e-79
>gnl|LJGI|TC72150 homologue to UniRef100_A7QIK3 Cluster: Chromosome chr9
scaffold_104, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_104, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 667
Score = 1019 bits (514), Expect = 0.0
Identities = 517/518 (99%)
Strand = Plus / Plus
Query: 1 atggtgctagcgcagttaggggggagcatttcgcgtgctctccagcagatgagcaatgcc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atggttctagcgcagttaggggggagcatttcgcgtgctctccagcagatgagcaatgcc 209
Query: 61 acggtgatcgacgagaaggtcctcaacgaatgcctcaaggagatcactcgagctcttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 acggtgatcgacgagaaggtcctcaacgaatgcctcaaggagatcactcgagctcttctt 269
Query: 121 caatccgatgttcaattcaagctcgtcgccgacatgcagaccaacatcaagaagattgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caatccgatgttcaattcaagctcgtcgccgacatgcagaccaacatcaagaagattgtc 329
Query: 181 aaccttgaccatctcgccgccggtcacgacaaacgcaagatcatccaacaagctgtgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaccttgaccatctcgccgccggtcacgacaaacgcaagatcatccaacaagctgtgttt 389
Query: 241 aatgagctctgcaaaatgctggatcctgggaagccctctttcgctcccaagaaaggaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aatgagctctgcaaaatgctggatcctgggaagccctctttcgctcccaagaaaggaaat 449
Query: 301 acaagtgtggtcatgttcgttggtttacaaggttctggaaaaactacaacctgtacaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acaagtgtggtcatgttcgttggtttacaaggttctggaaaaactacaacctgtacaaaa 509
Query: 361 tatgcacattatcatcagaagaaaggatggaagccagctctagtttgtgcagatacattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tatgcacattatcatcagaagaaaggatggaagccagctctagtttgtgcagatacattc 569
Query: 421 agagctggtgcatttgatcaattgaagcaaaatgccgctaaagctaagatccctttctac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agagctggtgcatttgatcaattgaagcaaaatgccgctaaagctaagatccctttctac 629
Query: 481 ggaagctatatggagtcagatcctgtgaaaattgctgt 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggaagctatatggagtcagatcctgtgaaaattgctgt 667
>gnl|LJGI|TC80914 similar to UniRef100_A8MSA9 Cluster: Uncharacterized protein
At1g48900.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At1g48900.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (37%)
Length = 474
Score = 535 bits (270), Expect = e-151
Identities = 425/474 (89%), Gaps = 2/474 (0%)
Strand = Plus / Plus
Query: 745 aaaatggatggccatgccaagggtggtggtgctcttagcgctgttgcagcaacaaagagt 804
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3 aaaatggatggccatgcaaagggtggtggtgctcttagcgctgttgcagcaactaagagt 62
Query: 805 cctgtcatattcattggaactggagaacatatggatgaggttgaagtttttgatgttaag 864
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 63 cctgtcatattcattggaactggagaacatatggatgaatttgaagtttttgatgttaaa 122
Query: 865 ccgttcgttagtcgtctattaggcatgggtgacttgtctgggcttatggacaaaattcat 924
||||| ||||||||||||||||||||||| || ||||||||| | ||||||||||||||
Sbjct: 123 ccgtttgttagtcgtctattaggcatgggagatttgtctgggttcatggacaaaattcag 182
Query: 925 ggagttgttcctagggatcaacagcctgaactgcttgagaagctgtcagaaggacacttc 984
| ||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||||
Sbjct: 183 gaagttgttcctatggatcaacagcctgaactgcttcaaaagctgtcagaaggaaacttt 242
Query: 985 acattgaggatgatgtatgagcagtttcagaacatacttaaaatgggtcctctaaaccag 1044
|| || ||||| ||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 243 accttaaggattatgtatgagcagtttcaaaacatacttaaaatgggtcctatcggtcag 302
Query: 1045 gtgttttctatgcttccaggatttagtgctgaactaatgcccaaaggcagtgagaaagaa 1104
|| ||||||||||| |||||||||||| ||||| ||||||| |||||| ||||||| |||
Sbjct: 303 gtattttctatgctaccaggatttagttctgaattaatgccaaaaggccgtgagaaggaa 362
Query: 1105 ggccaggcaaaaattaagcgttacatgacaatgatggattcaatgacaaacaaagagttg 1164
| || || |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 363 agtcaagc-caaattaagcgttacatgacaatgatggactcaatgacaaacgaagagttg 421
Query: 1165 gatagttcaaacccaaagctcatgaatgagtcacgtattttgcgaatagctcga 1218
||||| ||||||||||| | |||||||||||| | || ||||| ||||||||
Sbjct: 422 gatagctcaaacccaaa-atgatgaatgagtcaagaatgatgcgagtagctcga 474
>gnl|LJGI|TC71661 homologue to UniRef100_P49972 Cluster: Signal recognition particle 54
kDa protein 2; n=1; Solanum lycopersicum|Rep: Signal
recognition particle 54 kDa protein 2 - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(35%)
Length = 911
Score = 309 bits (156), Expect = 3e-83
Identities = 320/374 (85%), Gaps = 3/374 (0%)
Strand = Plus / Plus
Query: 991 aggatgatgtatgagcagtttcagaacatacttaaaatgggtcctctaaaccaggtgttt 1050
||||| ||||||||||||||||| ||||||||||||||||||||| | ||||| |||
Sbjct: 17 aggattatgtatgagcagtttcaaaacatacttaaaatgggtcctatcggtcaggtattt 76
Query: 1051 tctatgcttccaggatttagtgctgaactaatgcccaaaggcagtgagaaagaaggccag 1110
|||||||| |||||||||||| ||||| ||||||| |||||| ||||||| ||| | ||
Sbjct: 77 tctatgctaccaggatttagttctgaattaatgccaaaaggccgtgagaaggaaagtcaa 136
Query: 1111 gcaaaaattaagcgttacatgacaatgatggattcaatgacaaacaaagagttggatagt 1170
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 137 gccaaaattaagcgttacatgacaatgatggactcaatgacaaacgaagagttggatagc 196
Query: 1171 tcaaacccaaagctcatgaatgagtcacgtattttgcgaatagctcgaggttctggtcat 1230
|||||||| || | |||||||||||| | || ||||| |||||||||||||||||| |
Sbjct: 197 tcaaaccccaaaatgatgaatgagtcaagaatgatgcgagtagctcgaggttctggtcgt 256
Query: 1231 caagttagggaagtgatggagatgttggaagaatacaagcgtttgacaaagatgatatgg 1290
|| ||||||||||| ||||| ||| ||||||| ||||| ||| | |||| |||||||
Sbjct: 257 caggttagggaagtaatggaaatgatggaagagtacaaacgtcttgcaaa---gatatgg 313
Query: 1291 agcaaaatgaaagggctcaagacatcaaagaagggtgatatgagtgccctgtcgagaaat 1350
|||||||||||||| || || | | |||||||||| |||||||||||| | || |||||
Sbjct: 314 agcaaaatgaaaggacttaaaataccaaagaagggcgatatgagtgccttatcccgaaat 373
Query: 1351 atgaatgctcagca 1364
|||||||| |||||
Sbjct: 374 atgaatgcccagca 387
>gnl|LJGI|GO007107 homologue to UniRef100_P49971 Cluster: Signal recognition particle
54 kDa protein 1; n=1; Solanum lycopersicum|Rep: Signal
recognition particle 54 kDa protein 1 - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(20%)
Length = 301
Score = 295 bits (149), Expect = 4e-79
Identities = 263/301 (87%)
Strand = Plus / Plus
Query: 133 caattcaagctcgtcgccgacatgcagaccaacatcaagaagattgtcaaccttgaccat 192
||||||||||||||| ||| ||||||||||| ||||||||||||||||| || || ||
Sbjct: 1 caattcaagctcgtccgcgatatgcagaccaatatcaagaagattgtcaatctggaggat 60
Query: 193 ctcgccgccggtcacgacaaacgcaagatcatccaacaagctgtgtttaatgagctctgc 252
||||| || || ||| |||| |||| ||||||||| ||||||||||| ||||| ||||||
Sbjct: 61 ctcgctgcgggacacaacaagcgcaggatcatccagcaagctgtgttcaatgaactctgc 120
Query: 253 aaaatgctggatcctgggaagccctctttcgctcccaagaaaggaaatacaagtgtggtc 312
||||| ||||||||||| ||||| |||| ||| ||| |||||||| ||||||| |||
Sbjct: 121 aaaatcctggatcctggaaagccggcttttactctcaaaaaaggaaaaccaagtgttgtc 180
Query: 313 atgttcgttggtttacaaggttctggaaaaactacaacctgtacaaaatatgcacattat 372
||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||| |||||
Sbjct: 181 atgtttgttggtttacaaggatctggaaaaaccacaacttgtacgaaatatgcatattat 240
Query: 373 catcagaagaaaggatggaagccagctctagtttgtgcagatacattcagagctggtgca 432
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 241 catcaaaagaaaggctggaagccagctctagtatgtgcagatacatttagagctggtgca 300
Query: 433 t 433
|
Sbjct: 301 t 301