Miyakogusa Predicted Gene

Lj3g3v0030810.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0030810.1 Non Chatacterized Hit- tr|D7LP21|D7LP21_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.44,1e-17,seg,NULL,
gene.Ljchr3_pseudomol_20120830.path1.gene68.1
         (1377 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81078 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=...   860   0.0  
gnl|LJGI|FS339575 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n...   547   e-155
gnl|LJGI|TC65542 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=...   335   4e-91
gnl|LJGI|DC599883 weakly similar to UniRef100_Q8H6Q7 Cluster: CT...    98   2e-19
gnl|LJGI|TC64032 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=...    68   2e-10

>gnl|LJGI|TC81078 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
            trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
            orange), partial (16%)
          Length = 670

 Score =  860 bits (434), Expect = 0.0
 Identities = 583/632 (92%), Gaps = 3/632 (0%)
 Strand = Plus / Plus

                                                                        
Query: 703  aatattggccatcaacacacagggtgtgcagccgtagctgctcaatcccttgccattgga 762
            |||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 2    aatattggacatcaacaaacagggagtgcagccgcagctgctcaatcccttgccattgga 61

                                                                        
Query: 763  acttctggaatatctgcccctcctgaatcggcagagttcactggtccagatggtgttcat 822
            ||| |||||||||||||| |||||  |  ||||||||||| |||||||||||| || |||
Sbjct: 62   actcctggaatatctgcctctcctctactggcagagttcagtggtccagatggggtacat 121

                                                                        
Query: 823  ggcaattcttttccacccactttgggaaagtcaactgtttctgagcagcctcttgatcgc 882
            || ||| |||||||||| || |  |||||||||||||||||||||||||||||||| |||
Sbjct: 122  ggtaatacttttccaccaacatcaggaaagtcaactgtttctgagcagcctcttgagcgc 181

                                                                        
Query: 883  ctaattaaagcggtgaaatcattgacacctaatgcattaagtactgctgtcagtgatatt 942
            ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| 
Sbjct: 182  ctaattaaagcggcgaaatcattgacacctaacgcattaagtgctgctgtcagtgatatg 241

                                                                        
Query: 943  ggttcagttgtcagcatgaatgataggatagtaggatcagctcctggtaatggatccaaa 1002
            |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |
Sbjct: 242  ggttcagttgtcagcatgaacgataggatagcaggatcggctcctggtaatggatccaga 301

                                                                        
Query: 1003 gctgctgctggtgcagatttggttgccatgactaattgtcgccttcaggctaggaatttc 1062
            || |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 302  gccgctgttggtgaagatttggttgccatgaccaattgtcgccttcaggctaggaatttt 361

                                                                        
Query: 1063 atcaaccaagatggtgccaatggaaccaggaggatgaaacgctgcacccacgctacaccc 1122
             ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 362  gtcaaccaagatggtgccaatggaaccaggaggatgaaacgctgcaccaatgctacaccc 421

                                                                        
Query: 1123 ttgaatgatgtatcatatgctggttgcctgaacaatagtatcaagcagttagaagcttct 1182
            ||||||| |||||||| ||||||| || ||||| | ||||||| ||||||||||||||||
Sbjct: 422  ttgaatgttgtatcatctgctggtagcatgaacgacagtatcaggcagttagaagcttct 481

                                                                        
Query: 1183 gatttggattcaactgcaacat---gtatcaagaagcctaggattcagactaatcatgcc 1239
            |||||||| |||||||||||||   ||||||||||||||||||||||| |||||||||||
Sbjct: 482  gatttggagtcaactgcaacatctagtatcaagaagcctaggattcaggctaatcatgcc 541

                                                                        
Query: 1240 cttttggaagaaattagggaggttaatcagcgacttatcgacacagtagttgacataagt 1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  cttttggaagaaattagggaggttaatcagcgacttatcgacacagtagttgacataagt 601

                                            
Query: 1300 gatgaagaaattgatccaactgcagctgctgc 1331
            ||||||||| ||||||||||||||||||||||
Sbjct: 602  gatgaagaagttgatccaactgcagctgctgc 633


>gnl|LJGI|FS339575 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
           trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
           orange), partial (9%)
          Length = 537

 Score =  547 bits (276), Expect = e-155
 Identities = 302/312 (96%), Gaps = 9/312 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 294

                                                                       
Query: 61  gatatgtggcgaaggcttcaggcatcaggttctttaactctaccacaaagtgttctagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gatatgtggcgaaggcttcaggcatcaggttctttaactctaccacaaagtgttctagat 354

                                                                       
Query: 121 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaagnnnnnnn 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 355 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaa-------- 406

                                                                       
Query: 181 ncttctctggattcaacaacacagactggacagccaaacgggggtgattggcaagaagaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 407 -cttctctggattcaacaacacagactggacagccaaacgggggtgattggcaagaataa 465

                                                                       
Query: 241 gtgtatcaaaagatcaaaaccatgaaagaaaattacttgcctgatttgaatgagttgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgtatcaaaagatcaaaaccatgaaagaaaattacttgcctgatttgaatgagttgtac 525

                       
Query: 301 cagaaaattggt 312
           ||||||||||||
Sbjct: 526 cagaaaattggt 537


>gnl|LJGI|TC65542 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
           trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
           orange), partial (6%)
          Length = 697

 Score =  335 bits (169), Expect = 4e-91
 Identities = 172/173 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 301

                                                                       
Query: 61  gatatgtggcgaaggcttcaggcatcaggttctttaactctaccacaaagtgttctagat 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 302 gatatgtggcgaaggcttcaggcatcaggttctttaaccctaccacaaagtgttctagat 361

                                                                
Query: 121 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaag 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaag 414


>gnl|LJGI|DC599883 weakly similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
           trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
           orange), partial (6%)
          Length = 576

 Score = 97.6 bits (49), Expect = 2e-19
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                       
Query: 182 cttctctggattcaacaacacagactggacagccaaacgggggtgattggcaagaagaag 241
           ||||| ||||||| ||| |||||| || ||| ||||  |||| |||||||||||||||||
Sbjct: 325 cttctttggattctacagcacagattgcacaaccaagtggggctgattggcaagaagaag 384

                                                
Query: 242 tgtatcaaaagatcaaaaccatgaaagaaaattactt 278
           |||| ||||||||| ||||||| ||||||||||||||
Sbjct: 385 tgtaccaaaagatccaaaccataaaagaaaattactt 421


>gnl|LJGI|TC64032 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
            trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
            orange), partial (14%)
          Length = 890

 Score = 67.9 bits (34), Expect = 2e-10
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                          
Query: 1330 gcatgcttgtccctacaagtcatcctaccagttcccccatattcct 1375
            |||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct: 377  gcatgcttgtccctacaaattatcctacctgttcccccatattcct 422



 Score = 56.0 bits (28), Expect = 6e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  atgcatcaacaacacccgcaagttatcaggca 32
          |||| |||||||||||||||||||||||||||
Sbjct: 14 atgcttcaacaacacccgcaagttatcaggca 45