Miyakogusa Predicted Gene
- Lj3g3v0030810.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0030810.1 Non Chatacterized Hit- tr|D7LP21|D7LP21_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.44,1e-17,seg,NULL,
gene.Ljchr3_pseudomol_20120830.path1.gene68.1
(1377 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81078 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=... 860 0.0
gnl|LJGI|FS339575 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n... 547 e-155
gnl|LJGI|TC65542 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=... 335 4e-91
gnl|LJGI|DC599883 weakly similar to UniRef100_Q8H6Q7 Cluster: CT... 98 2e-19
gnl|LJGI|TC64032 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=... 68 2e-10
>gnl|LJGI|TC81078 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
orange), partial (16%)
Length = 670
Score = 860 bits (434), Expect = 0.0
Identities = 583/632 (92%), Gaps = 3/632 (0%)
Strand = Plus / Plus
Query: 703 aatattggccatcaacacacagggtgtgcagccgtagctgctcaatcccttgccattgga 762
|||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 2 aatattggacatcaacaaacagggagtgcagccgcagctgctcaatcccttgccattgga 61
Query: 763 acttctggaatatctgcccctcctgaatcggcagagttcactggtccagatggtgttcat 822
||| |||||||||||||| ||||| | ||||||||||| |||||||||||| || |||
Sbjct: 62 actcctggaatatctgcctctcctctactggcagagttcagtggtccagatggggtacat 121
Query: 823 ggcaattcttttccacccactttgggaaagtcaactgtttctgagcagcctcttgatcgc 882
|| ||| |||||||||| || | |||||||||||||||||||||||||||||||| |||
Sbjct: 122 ggtaatacttttccaccaacatcaggaaagtcaactgtttctgagcagcctcttgagcgc 181
Query: 883 ctaattaaagcggtgaaatcattgacacctaatgcattaagtactgctgtcagtgatatt 942
||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 182 ctaattaaagcggcgaaatcattgacacctaacgcattaagtgctgctgtcagtgatatg 241
Query: 943 ggttcagttgtcagcatgaatgataggatagtaggatcagctcctggtaatggatccaaa 1002
|||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |
Sbjct: 242 ggttcagttgtcagcatgaacgataggatagcaggatcggctcctggtaatggatccaga 301
Query: 1003 gctgctgctggtgcagatttggttgccatgactaattgtcgccttcaggctaggaatttc 1062
|| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 302 gccgctgttggtgaagatttggttgccatgaccaattgtcgccttcaggctaggaatttt 361
Query: 1063 atcaaccaagatggtgccaatggaaccaggaggatgaaacgctgcacccacgctacaccc 1122
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 362 gtcaaccaagatggtgccaatggaaccaggaggatgaaacgctgcaccaatgctacaccc 421
Query: 1123 ttgaatgatgtatcatatgctggttgcctgaacaatagtatcaagcagttagaagcttct 1182
||||||| |||||||| ||||||| || ||||| | ||||||| ||||||||||||||||
Sbjct: 422 ttgaatgttgtatcatctgctggtagcatgaacgacagtatcaggcagttagaagcttct 481
Query: 1183 gatttggattcaactgcaacat---gtatcaagaagcctaggattcagactaatcatgcc 1239
|||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 482 gatttggagtcaactgcaacatctagtatcaagaagcctaggattcaggctaatcatgcc 541
Query: 1240 cttttggaagaaattagggaggttaatcagcgacttatcgacacagtagttgacataagt 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cttttggaagaaattagggaggttaatcagcgacttatcgacacagtagttgacataagt 601
Query: 1300 gatgaagaaattgatccaactgcagctgctgc 1331
||||||||| ||||||||||||||||||||||
Sbjct: 602 gatgaagaagttgatccaactgcagctgctgc 633
>gnl|LJGI|FS339575 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
orange), partial (9%)
Length = 537
Score = 547 bits (276), Expect = e-155
Identities = 302/312 (96%), Gaps = 9/312 (2%)
Strand = Plus / Plus
Query: 1 atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 294
Query: 61 gatatgtggcgaaggcttcaggcatcaggttctttaactctaccacaaagtgttctagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gatatgtggcgaaggcttcaggcatcaggttctttaactctaccacaaagtgttctagat 354
Query: 121 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaagnnnnnnn 180
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaa-------- 406
Query: 181 ncttctctggattcaacaacacagactggacagccaaacgggggtgattggcaagaagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 407 -cttctctggattcaacaacacagactggacagccaaacgggggtgattggcaagaataa 465
Query: 241 gtgtatcaaaagatcaaaaccatgaaagaaaattacttgcctgatttgaatgagttgtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgtatcaaaagatcaaaaccatgaaagaaaattacttgcctgatttgaatgagttgtac 525
Query: 301 cagaaaattggt 312
||||||||||||
Sbjct: 526 cagaaaattggt 537
>gnl|LJGI|TC65542 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
orange), partial (6%)
Length = 697
Score = 335 bits (169), Expect = 4e-91
Identities = 172/173 (99%)
Strand = Plus / Plus
Query: 1 atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgcatcaacaacacccgcaagttatcaggcacaaacagcagccaaatacattgcaacga 301
Query: 61 gatatgtggcgaaggcttcaggcatcaggttctttaactctaccacaaagtgttctagat 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 302 gatatgtggcgaaggcttcaggcatcaggttctttaaccctaccacaaagtgttctagat 361
Query: 121 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaag 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caacaaaagcagttatgtcagtcacaaagaccccttccaaaaatttcatcaag 414
>gnl|LJGI|DC599883 weakly similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
orange), partial (6%)
Length = 576
Score = 97.6 bits (49), Expect = 2e-19
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 182 cttctctggattcaacaacacagactggacagccaaacgggggtgattggcaagaagaag 241
||||| ||||||| ||| |||||| || ||| |||| |||| |||||||||||||||||
Sbjct: 325 cttctttggattctacagcacagattgcacaaccaagtggggctgattggcaagaagaag 384
Query: 242 tgtatcaaaagatcaaaaccatgaaagaaaattactt 278
|||| ||||||||| ||||||| ||||||||||||||
Sbjct: 385 tgtaccaaaagatccaaaccataaaagaaaattactt 421
>gnl|LJGI|TC64032 similar to UniRef100_Q8H6Q7 Cluster: CTV.22; n=1; Poncirus
trifoliata|Rep: CTV.22 - Poncirus trifoliata (Hardy
orange), partial (14%)
Length = 890
Score = 67.9 bits (34), Expect = 2e-10
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1330 gcatgcttgtccctacaagtcatcctaccagttcccccatattcct 1375
|||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct: 377 gcatgcttgtccctacaaattatcctacctgttcccccatattcct 422
Score = 56.0 bits (28), Expect = 6e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 atgcatcaacaacacccgcaagttatcaggca 32
|||| |||||||||||||||||||||||||||
Sbjct: 14 atgcttcaacaacacccgcaagttatcaggca 45