Miyakogusa Predicted Gene

Lj3g3v0002180.1
Show Alignment: 
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0002180.1 Non Chatacterized Hit- tr|K4BLR8|K4BLR8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,44.19,0.00000000000003,ZF_RING_2,Zinc finger, RING-type;
seg,NULL; no description,Zinc finger, RING/FYVE/PHD-type,CUFF.40174.1
         (2184 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS328315 similar to UniRef100_A2DGS8 Cluster: Clan CA  ...   916   0.0  
gnl|LJGI|FS354655 weakly similar to UniRef100_A0DQ34 Cluster: Ch...   634   0.0  

>gnl|LJGI|FS328315 similar to UniRef100_A2DGS8 Cluster: Clan CA  family C19  ubiquitin
           hydrolase-like cysteine peptidase; n=1; Trichomonas,
           partial (0%)
          Length = 607

 Score =  916 bits (462), Expect = 0.0
 Identities = 462/462 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacaaagacaagtgaagagttttggttaaacttaatgaattccgattctgctaaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atgacaaagacaagtgaagagttttggttaaacttaatgaattccgattctgctaaccat 205

                                                                       
Query: 61  gatgatgctactgctaccacccctttacctgtgctttcagtgtctccttctcccctcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gatgatgctactgctaccacccctttacctgtgctttcagtgtctccttctcccctcttg 265

                                                                       
Query: 121 aatatgaatgaaacatcttctctattttacagccaggaacaacatggaggtagttccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatatgaatgaaacatcttctctattttacagccaggaacaacatggaggtagttccatg 325

                                                                       
Query: 181 actgctgtttcgtctcagttcgggggttctcagaattcccagatggaccccagttgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actgctgtttcgtctcagttcgggggttctcagaattcccagatggaccccagttgctta 385

                                                                       
Query: 241 tatgaaggacaggaacatgtatcccttccgtgtccggtaggatacatggggtggccatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatgaaggacaggaacatgtatcccttccgtgtccggtaggatacatggggtggccatat 445

                                                                       
Query: 301 caatattctaggcatggtgatctaccaatctctgatgatgtgacgaatgttaacttcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caatattctaggcatggtgatctaccaatctctgatgatgtgacgaatgttaacttcaat 505

                                                                       
Query: 361 ttgaatagttctgtgaagcctgacagtgatggaaaatgtgtgaccccaatggatagtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgaatagttctgtgaagcctgacagtgatggaaaatgtgtgaccccaatggatagtttg 565

                                                     
Query: 421 gccaccaggcttcaaatgggcacccctagtggaacagcaatg 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gccaccaggcttcaaatgggcacccctagtggaacagcaatg 607


>gnl|LJGI|FS354655 weakly similar to UniRef100_A0DQ34 Cluster: Chromosome undetermined
            scaffold_6, whole genome shotgun sequence; n=1;
            Paramecium tetraurelia|Rep: Chromosome undetermined
            scaffold_6, whole genome shotgun sequence - Paramecium
            tetraurelia, partial (3%)
          Length = 615

 Score =  634 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1865 taaaccaacaacagttgatagctcaatctcttgctcgccaacggttgatgaatcaaatta 1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613  taaaccaacaacagttgatagctcaatctcttgctcgccaacggttgatgaatcaaatta 554

                                                                        
Query: 1925 tacaatctactcctgctactgctcacaattatatcaagtataaagatcaaacacctgaac 1984
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553  tacaatctactcctgctactgctcacaattatatcaagtataaagatcaaacacctgaac 494

                                                                        
Query: 1985 cacttggatataaatgcatgttgtgcaaaagggatctctcctacgtcccagaagggccaa 2044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  cacttggatataaatgcatgttgtgcaaaagggatctctcctacgtcccagaagggccaa 434

                                                                        
Query: 2045 tttcacagccacctactccgcctgcggctgctgtcctgtcatgtggccacacatttcacc 2104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433  tttcacagccacctactccgcctgcggctgctgtcctgtcatgtggccacacatttcacc 374

                                                                        
Query: 2105 aacattgtttggagaaaatgactcctgatggccaatccaaagaccctccatgcattccct 2164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373  aacattgtttggagaaaatgactcctgatggccaatccaaagaccctccatgcattccct 314

                                
Query: 2165 gtgctcttggagaatagtga 2184
            ||||||||||||||||||||
Sbjct: 313  gtgctcttggagaatagtga 294