Miyakogusa Predicted Gene
- Lj2g3v3403240.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3403240.3 tr|I1M634|I1M634_SOYBN Glutamate receptor
(Fragment) OS=Glycine max PE=3 SV=1,83.76,0,seg,NULL;
ANF_receptor,Extracellular ligand-binding receptor;
Lig_chan,Ionotropic glutamate receptor,CUFF.40144.3
(2811 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69253 similar to UniRef100_A7P8R9 Cluster: Chromosome... 1065 0.0
gnl|LJGI|TC75875 similar to UniRef100_Q93YT1 Cluster: Glutamate ... 844 0.0
gnl|LJGI|TC77528 similar to UniRef100_A7PKV6 Cluster: Chromosome... 92 2e-17
gnl|LJGI|BP065941 86 1e-15
gnl|LJGI|AV425919 68 3e-10
gnl|LJGI|TC72265 similar to UniRef100_Q84W41 Cluster: Glutamate ... 58 3e-07
gnl|LJGI|TC61089 weakly similar to UniRef100_A7PDB3 Cluster: Chr... 56 1e-06
>gnl|LJGI|TC69253 similar to UniRef100_A7P8R9 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 741
Score = 1065 bits (537), Expect = 0.0
Identities = 543/545 (99%)
Strand = Plus / Plus
Query: 1 atgcagcagcagctagtctatcacgaccaccacgggttccggttctggatgaatctgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atgcagcagcagctagtctatcacgaccaccacgggttccggttctggatgaatctgctg 256
Query: 61 agcttgtgcctgtgcctgtgcctgtgccttgcattgcacagagcaccaggggaaggagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agcttgtgcctgtgcctgtgcctgtgccttgcattgcacagagcaccaggggaaggagct 316
Query: 121 tccagacatgacaacgtcgtcgtcaatgtcggtgccatattcactctgaagactataaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccagacatgacaacgtcgtcgtcaatgtcggtgccatattcactctgaagactataaac 376
Query: 181 ggaaaagtctccaagattgccatcgaagctgcacagaaagatgtcaattccgatcctcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggaaaagtctccaagattgccatcgaagctgcacagaaagatgtcaattccgatcctcgc 436
Query: 241 atcttgggtggacgtaaactttccataaccatccatgattctaacttcagtggctttcta 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 atcttgggtggacgtaaactttccataaccatccatgattctaacttcagaggctttcta 496
Query: 301 ggctttattggggccctcaggttcttgatgactgatactgtagctataattggtccacaa 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggctttattggggccctcaagttcttgatgactgatactgtagctataattggtccacaa 556
Query: 361 aattcagtaatggcccatgtgctttcgcatcttgcaaatgagctccaagttcctctgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aattcagtaatggcccatgtgctttcgcatcttgcaaatgagctccaagttcctctgcta 616
Query: 421 tctttcacggctttggatcccaccctcacacctcttcagtgtccttattttgtccaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctttcacggctttggatcccaccctcacacctcttcagtgtccttattttgtccaaact 676
Query: 481 gcacccagtgacctgtttcagatgactgcagttgctgacatgataagctattttggttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcacccagtgacctgtttcagatgactgcagttgctgacatgataagctattttggttgg 736
Query: 541 aggca 545
|||||
Sbjct: 737 aggca 741
>gnl|LJGI|TC75875 similar to UniRef100_Q93YT1 Cluster: Glutamate receptor 3.2
precursor; n=1; Arabidopsis thaliana|Rep: Glutamate
receptor 3.2 precursor - Arabidopsis thaliana (Mouse-ear
cress), partial (16%)
Length = 897
Score = 844 bits (426), Expect = 0.0
Identities = 439/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 2371 gcatttccgagggattctcctttagcaattgatatgtcaactgccattctgagtctatct 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttccgagggattctcctttagcaattgatatgtcaactgccattctgagtctatct 320
Query: 2431 gagaatggtgaacttaggaggagccgtga-aaaggggctttcggaaaaggcttgtggttt 2489
|||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct: 321 gagaatggtgaacttaggaggatccgtgacaaagtggctttcggaaaaggcttgtggttt 380
Query: 2490 tcgtaataatgaggatgagcagcttcaattacatagctttcggggcttgtttctgatctg 2549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgtaataatgaggatgagcagcttcaattacatagctttcggggcttgtttctgatctg 440
Query: 2550 tggcataacatgtttcctggcgcttcttatctacttcttttcaatagtacgccaattcag 2609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcataacatgtttcctggcgcttcttatctacttcttttcaatagtacgccaattcag 500
Query: 2610 tcaaaacactcctcacaaagacagatcacgcatccagacttttctaaattttgttgatga 2669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaacactcctcacaaagacagatcacgcatccagacttttctaaattttgttgatga 560
Query: 2670 aaaagaagacatatcacacaaccaattaaaaagaaaagttgaggatatttcatcagatgc 2729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagaagacatatcacacaaccaattaaaaagaaaagttgaggatatttcatcagatgc 620
Query: 2730 ttattccagagaaagtcatttgaggagcatagatcagagggcacaaatggataaatccca 2789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttattccagagaaagtcatttgaggagcatagatcagagggcacaaatggataaatccca 680
Query: 2790 agaggctcctttggcttgactc 2811
||||||||||||||||||||||
Sbjct: 681 agaggctcctttggcttgactc 702
Score = 517 bits (261), Expect = e-145
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 1684 ggtgacattgctattgtcactagccggacaaagattgtggattttactcaaccatttata 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgacattgctattgtcactagccggacaaagattgtggattttactcaaccatttata 60
Query: 1744 gagtcaggtttagttgtggttgctccggtgaaaaagttgaagacaagtgcttgggctttc 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagtcaggtttagttgtggttgctccggtgaaaaagttgaagacaagtgcttgggctttc 120
Query: 1804 ttgagaccgtttactccacagatgtggggtgtcactgcactttttctccttcttgttgga 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgagaccgtttactccacagatgtggggtgtcactgcactttttctccttcttgttgga 180
Query: 1864 atagtggtgtggattcttgaacacagaacaaatgatgagtttcgggggcctccaaagaaa 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atagtggtgtggattcttgaacacagaacaaatgatgagtttcgggggcctccaaagaaa 240
Query: 1924 cagatggttacgattctttgg 1944
|||||||||||||||||||||
Sbjct: 241 cagatggttacgattctttgg 261
>gnl|LJGI|TC77528 similar to UniRef100_A7PKV6 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 920
Score = 91.7 bits (46), Expect = 2e-17
Identities = 161/198 (81%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 1894 aatgatgagtttcgggggcctcc-aaagaaacagatggttacgattctttggtttagttt 1952
|||||||||||| |||| ||||| ||| ||||| || || || ||| | |||||||| ||
Sbjct: 141 aatgatgagtttaggggacctcccaaaaaaacaaattgtcaccattttgtggtttagctt 200
Query: 1953 ctcaaccatgttctttgcgcatagagaaaacacagttagtacacttggtcgtgttgtgtt 2012
||||| ||||||||||| || || ||||| |||||||| || |||||||| ||||| |
Sbjct: 201 ttcaactatgttctttgctcacagggaaaatacagttagcactcttggtcgctttgtgct 260
Query: 2013 gataatctggctttttgtggttctgataatcaattcaagctacacagcaagcttgacatc 2072
| | || ||||| ||||| ||||| ||||| || ||||| ||||| |||||| |||| ||
Sbjct: 261 gcttatatggctatttgtagttctaataattaactcaagttacacggcaagcctgacttc 320
Query: 2073 aattctgactgtgcaaca 2090
||| || ||||| |||||
Sbjct: 321 aatcctcactgtacaaca 338
>gnl|LJGI|BP065941
Length = 281
Score = 85.7 bits (43), Expect = 1e-15
Identities = 109/121 (90%), Gaps = 10/121 (8%)
Strand = Plus / Minus
Query: 2701 agaaaagttgaggatatttcatcagatgcttatt-ccagagaaagt-catttga-ggag- 2756
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 281 agaaaagttgaggatatttcatcagatgcttattcccagagaaagtccatttgagggagc 222
Query: 2757 cataga--tcaga-gggcacaaat--ggataaatccc-aagaggctcctttggcttgact 2810
|||||| |||| ||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 221 catagaatccagaggggtacaaatggggataaatcccnaagaggctcctttggcttgact 162
Query: 2811 c 2811
|
Sbjct: 161 c 161
>gnl|LJGI|AV425919
Length = 191
Score = 67.9 bits (34), Expect = 3e-10
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1943 ggtttagtttctcaaccatgttctttgcgcatag 1976
||||||||||||||||||||||||||||||||||
Sbjct: 120 ggtttagtttctcaaccatgttctttgcgcatag 153
>gnl|LJGI|TC72265 similar to UniRef100_Q84W41 Cluster: Glutamate receptor 3.6
precursor; n=1; Arabidopsis thaliana|Rep: Glutamate
receptor 3.6 precursor - Arabidopsis thaliana (Mouse-ear
cress), partial (9%)
Length = 697
Score = 58.0 bits (29), Expect = 3e-07
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 2342 aagagttcaccaaaggtggatggggatttgcatttccgagggattctcc 2390
|||||||||| ||| |||| |||||||||||||| | ||||||||||||
Sbjct: 40 aagagttcacaaaaagtggctggggatttgcattccagagggattctcc 88
>gnl|LJGI|TC61089 weakly similar to UniRef100_A7PDB3 Cluster: Chromosome chr17
scaffold_12, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (65%)
Length = 1256
Score = 56.0 bits (28), Expect = 1e-06
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 62 gcttgtgcctgtgcctgtgcctgtgcct 89
||||||||||||||||||||||||||||
Sbjct: 666 gcttgtgcctgtgcctgtgcctgtgcct 639