Miyakogusa Predicted Gene

Lj2g3v3373140.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3373140.1 gene.g44743.t1.1
         (1338 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS349909 homologue to UniRef100_Q65834 Cluster: Coat pr...   714   0.0  

>gnl|LJGI|FS349909 homologue to UniRef100_Q65834 Cluster: Coat protein; n=1; Beet
            western yellows virus|Rep: Coat protein - Beet western
            yellows virus, partial (6%)
          Length = 708

 Score =  714 bits (360), Expect = 0.0
 Identities = 396/408 (97%)
 Strand = Plus / Plus

                                                                        
Query: 745  tcgagggagtggaattatgtgtggggtttgaagggcccattcaaggtctgcaactttgtg 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tcgagggagtggaattatgtgtggggtttgaagggcccattcaaggtctgcaactttgtg 360

                                                                        
Query: 805  tggagacttcttcataatgggctttgggttaactacagacgctggcaatcgaacctgacg 864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tggagacttcttcataatgggctttgggttaactacagacgctggcaatcgaacctgacg 420

                                                                        
Query: 865  actacgccaacgtgcccgctttgtgatgaagctgatgaaactcctcttcatctatttcgg 924
            || || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421  accacaccgacgtgcccgctttgtgatgaagctgatgaaactcctcttcatctattccgg 480

                                                                        
Query: 925  gattgctctaaggtgaaaccgcgatggttgcatttgatttatcagcagcatgtgagtgag 984
            |||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct: 481  gattactctaaggtgaaaccgctatggttgcatttgattgatcagcagcatatgagtgag 540

                                                                        
Query: 985  ttcttcgccggtgacctgaaagcttgggtaatgaggaacctgcaatcgaattgtctgcac 1044
            |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 541  ttcttcgccggtgacctgaaagtttgggtaatgaggaacctacaatcgaattgtctgcac 600

                                                                        
Query: 1045 tcgatgggcaggagtggccctccagagtttgctctccttctttgggccatctggaagtcg 1104
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 601  tcgatgggcaggagtggccctccagagttcgctctccttctttgggccatctggaagccg 660

                                                            
Query: 1105 cgtgctaattttgtcttccagggaactccgtttgatttaaggtgcatg 1152
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  cgtgctaattttgtcttccagggaactccgtttgatttaaggtgcatg 708



 Score = 71.9 bits (36), Expect = 1e-11
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 705 cactatgccaccgccggcgccaaacattgggaggga 740
           ||||||||||||||||||||||||||||||||||||
Sbjct: 177 cactatgccaccgccggcgccaaacattgggaggga 212