Miyakogusa Predicted Gene
- Lj2g3v3341890.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3341890.3 Non Chatacterized Hit- tr|I1M648|I1M648_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,68.62,0,seg,NULL; The
RING-variant domain is a C4HC3 zinc-fing,Zinc finger, RING-CH-type;
RINGv,Zinc finger,,CUFF.40139.3
(1323 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS324695 weakly similar to UniRef100_A7PJQ4 Cluster: Ch... 1178 0.0
gnl|LJGI|FS351122 similar to UniRef100_A7PJQ4 Cluster: Chromosom... 385 e-106
gnl|LJGI|BP058247 similar to UniRef100_A7PJQ4 Cluster: Chromosom... 281 5e-75
gnl|LJGI|TC81482 homologue to UniRef100_A7PJQ4 Cluster: Chromoso... 167 2e-40
gnl|LJGI|TC64680 similar to UniRef100_A7PT25 Cluster: Chromosome... 60 4e-08
gnl|LJGI|BF177830 similar to UniRef100_A7NWA0 Cluster: Chromosom... 52 9e-06
>gnl|LJGI|FS324695 weakly similar to UniRef100_A7PJQ4 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (6%)
Length = 764
Score = 1178 bits (594), Expect = 0.0
Identities = 601/602 (99%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 1 atggagaacacaggcgcagatgctgctcaacttcaaactcaaattcatactcatcctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atggagaacacaggcgcagatgctgctcaacttcaaactcaaattcatactcatcctgct 222
Query: 61 cagacaaaaccatgtggtgatggaagtgataatggtgacaaggcctccttgattcgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cagacaaaaccatgtggtgatggaagtgataatggtgacaaggcctccttgattcgtcag 282
Query: 121 tccagaagaccaactctctcctcgctgcaaataccagcacgatcactggatattgcgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tccagaagaccaactctctcctcgctgcaaataccagcacgatcactggatattgcgttg 342
Query: 181 tcttcttttgcaaagacggatgctccttcaccttcagtttcgctgtcaagtcctggttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcttcttttgcaaagacggatgctccttcaccttcagtttcgctgtcaagtcctggttcc 402
Query: 241 gctgccagaggacttcctccgaggcccaattcagccagagtcagacctcgggggaaatcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gctgccagaggacttcctccgaggcccaattcagccagagtcagacctcgggggaaatcg 462
Query: 301 tctagcaggacaaaaacttgttcctccgacactgagaggacagttctcattgttcctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctagcaggacaaaaacttgttcctccgacactgagaggacagttctcattgttcctcat 522
Query: 361 actcccccatcagatgctcctttggatataccttccccttcaaggtttcggtctcttact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 actcccccatcagatgctcctttggatataccttccccttcaaggtttcggtctcttact 582
Query: 421 aataaggccatctcttccccgtcaattaaagctgcacattcattaccagttactccactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aataaggccatctcttccccgtcaattaaagctgcacattcattaccagttactccactt 642
Query: 481 acaacttcaggtgcagagaatatgcacggaagacatctagggtgtgactctggtttaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acaacttcaggtgcagagaatatgcacggaagacatctagggtgtgactctggtttaagt 702
Query: 541 acactggaagttcagcagc-acatgactcgatcattttctgttccagttaatggcaatgc 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 acactggaagttcagcagcaacatgactcgatcattttctgttccagttaatggcaatgc 762
Query: 600 ca 601
||
Sbjct: 763 ca 764
>gnl|LJGI|FS351122 similar to UniRef100_A7PJQ4 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 653
Score = 385 bits (194), Expect = e-106
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 982 ccacaacagagagaaatagcttattacaggatctggcaggatgtaccggtacttaccttg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccacaacagagagaaatagcttattacaggatctggcaggatgtaccggtacttaccttg 594
Query: 1042 gtcagcatgcttgcttacttttgctttctagaggaactactggtttcagatttgggccct 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtcagcatgcttgcttacttttgctttctagaggaactactggtttcagatttgggccct 534
Query: 1102 cgtgctcttgccatttcgctacccttctccggtgttttaggtctgttttcatctatgatt 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cgtgctcttgccatttcgctacccttctccggtgttttaggtctgttttcatctatgatt 474
Query: 1162 gcgtcaaccatggt 1175
||||||||||||||
Sbjct: 473 gcgtcaaccatggt 460
Score = 297 bits (150), Expect = 9e-80
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 1174 gttctctccattctcctttcctctttcattggatttggcattgcaatcagtatgaattct 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gttctctccattctcctttcctctttcattggatttggcattgcaatcagtatgaattct 306
Query: 1234 ctccttaccgaatttatgatatggagagcaagtaggcagtttcaatcttccaatgagaat 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctccttaccgaatttatgatatggagagcaagtaggcagtttcaatcttccaatgagaat 246
Query: 1294 gttaacacgacagagcagcagcgccgtgat 1323
||||||||||||||||||||||||||||||
Sbjct: 245 gttaacacgacagagcagcagcgccgtgat 216
>gnl|LJGI|BP058247 similar to UniRef100_A7PJQ4 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 467
Score = 281 bits (142), Expect = 5e-75
Identities = 148/150 (98%)
Strand = Plus / Minus
Query: 1174 gttctctccattctcctttcctctttcattggatttggcattgcaatcagtatgaattct 1233
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 gttctctccattctcctttcctctttcattggatttggcattgccatcagtatgaattct 268
Query: 1234 ctccttaccgaatttatgatatggagagcaagtaggcagtttcaatcttccaatgagaat 1293
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 267 ctccttaccgaatttatgatatggagagcaagtaggcagtttcaatcttcccatgagaat 208
Query: 1294 gttaacacgacagagcagcagcgccgtgat 1323
||||||||||||||||||||||||||||||
Sbjct: 207 gttaacacgacagagcagcagcgccgtgat 178
>gnl|LJGI|TC81482 homologue to UniRef100_A7PJQ4 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 1429
Score = 167 bits (84), Expect = 2e-40
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 811 tgcagttgcaaaggtgatcttgcacttgctcaccaagactgtgcagttaagtggtttagt 870
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1302 tgcagttgtaaaggtgagcttgcacttgctcaccaagactgtgcagtaaagtggtttagt 1243
Query: 871 attaaaggaaacaggacatgtgatgtctgcaagcaggatgtcaaaaacctcccagtaaca 930
|| |||||||| | ||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 1242 atcaaaggaaataagacctgtgatgtctgcaagcaggatgtccgaaaccttccagtaacg 1183
Query: 931 ctgttgaaaatt 942
|| |||||||||
Sbjct: 1182 ctcttgaaaatt 1171
Score = 103 bits (52), Expect = 3e-21
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 1006 tacaggatctggcaggatgtaccggtacttaccttggtcagcatgcttgcttacttttgc 1065
||||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||
Sbjct: 177 tacaggatctggcaggatgtaccagtactcgtcttggtcagcatgctggcatacttttgc 118
Query: 1066 tttctagaggaactactggt 1085
||||||||||||||| ||||
Sbjct: 117 tttctagaggaactattggt 98
>gnl|LJGI|TC64680 similar to UniRef100_A7PT25 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (35%)
Length = 1291
Score = 60.0 bits (30), Expect = 4e-08
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 806 tggaatgcagttgcaaaggtgatcttgcacttgctcaccaagactgtgcagttaagtggt 865
|||||||||| ||||||||||| ||||| || |||||| |||| ||||| |||| ||||
Sbjct: 29 tggaatgcagctgcaaaggtgaacttgctctggctcacaaagaatgtgctattaaatggt 88
Query: 866 ttagtattaaaggaaacaggacatgtgatgtctgcaag 903
||||| | || || |||| ||| || ||||| ||||||
Sbjct: 89 ttagtttgaagggtaacaagacctgcgatgtttgcaag 126
>gnl|LJGI|BF177830 similar to UniRef100_A7NWA0 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 461
Score = 52.0 bits (26), Expect = 9e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 802 aaaatggaatgcagttgcaaaggtga 827
||||||||||||||||||||||||||
Sbjct: 260 aaaatggaatgcagttgcaaaggtga 285